Package psidev.psi.mi.jami.bridges.mapper.mock

Class MockProteinMapper

java.lang.Object

psidev.psi.mi.jami.bridges.mapper.mock.MockProteinMapper

All Implemented Interfaces:

ProteinMapper

public class MockProteinMapper
extends Object
implements ProteinMapper

Created with IntelliJ IDEA.

Since:

23/07/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MockProteinMapper()	Constructor for MockProteinMapper.

Method Summary

Modifier and Type	Method	Description
void	addMappingResult(String oldKey, String newIdentifier)	addMappingResult.
ProteinMapperListener	getListener()	Getter for the field listener.
boolean	isCheckingEnabled()	isCheckingEnabled.
boolean	isPriorityIdentifiers()	isPriorityIdentifiers.
boolean	isPrioritySequence()	isPrioritySequence.
void	map(Protein p)	Will remap the protein using the settings provided.
void	setCheckingEnabled(boolean checkingEnabled)	setCheckingEnabled.
void	setListener(ProteinMapperListener listener)	setListener.
void	setPriorityIdentifiers(boolean priorityIdentifiers)	Setter for the field priorityIdentifiers.
void	setPrioritySequence(boolean prioritySequence)	Setter for the field prioritySequence.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MockProteinMapper

public MockProteinMapper()

Constructor for MockProteinMapper.

Method Detail

addMappingResult

public void addMappingResult(String oldKey,
                             String newIdentifier)

addMappingResult.

Parameters:

oldKey - a String object.

newIdentifier - a String object.

setListener

public void setListener(ProteinMapperListener listener)

setListener.

Specified by:

setListener in interface ProteinMapper

Parameters:

listener - a ProteinMapperListener object.

getListener

public ProteinMapperListener getListener()

Getter for the field listener.

Specified by:

getListener in interface ProteinMapper

Returns:

a ProteinMapperListener object.

map

public void map(Protein p)
         throws BridgeFailedException

Will remap the protein using the settings provided. A remapReport will be fired to all RemapListeners at the end.

Specified by:

map in interface ProteinMapper

Parameters:

p - a Protein object.

Throws:

BridgeFailedException - if any.

isCheckingEnabled

public boolean isCheckingEnabled()

isCheckingEnabled.

Returns:

a boolean.

setCheckingEnabled

public void setCheckingEnabled(boolean checkingEnabled)

setCheckingEnabled.

Parameters:

checkingEnabled - a boolean.

isPriorityIdentifiers

public boolean isPriorityIdentifiers()

isPriorityIdentifiers.

Returns:

a boolean.

setPriorityIdentifiers

public void setPriorityIdentifiers(boolean priorityIdentifiers)

Setter for the field priorityIdentifiers.

Parameters:

priorityIdentifiers - a boolean.

isPrioritySequence

public boolean isPrioritySequence()

isPrioritySequence.

Returns:

a boolean.

setPrioritySequence

public void setPrioritySequence(boolean prioritySequence)

Setter for the field prioritySequence.

Parameters:

prioritySequence - a boolean.