Package psidev.psi.mi.jami.bridges.ols

Class CachedOlsOntologyTermFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

psidev.psi.mi.jami.bridges.ols.CachedOlsFetcher<OntologyTerm>

psidev.psi.mi.jami.bridges.ols.CachedOlsOntologyTermFetcher

All Implemented Interfaces:

CachedFetcher, CvTermFetcher<OntologyTerm>, OntologyTermFetcher

public class CachedOlsOntologyTermFetcher
extends CachedOlsFetcher<OntologyTerm>
implements OntologyTermFetcher

Code for the cache based on the CachedOntologyService at uk.ac.ebi.intact.bridges.olslight;

Since:

03/07/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	CACHE_NAME	Constant CACHE_NAME="ontology-cache"

Fields inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

EHCACHE_CONFIG_FILE

Constructor Summary

Constructors

Constructor	Description
CachedOlsOntologyTermFetcher()	Constructor for CachedOlsOntologyTermFetcher.

Method Summary

Modifier and Type	Method	Description
Set<OntologyTerm>	fetchRootTerms(String databaseName)	fetchRootTerms.
Set<OntologyTerm>	fetchRootTerms(CvTerm database)	fetchRootTerms.
protected OntologyTermFetcher	getDelegateFetcher()	Getter for the field delegateFetcher.

Methods inherited from class psidev.psi.mi.jami.bridges.ols.CachedOlsFetcher

fetchByIdentifier, fetchByIdentifier, fetchByIdentifiers, fetchByIdentifiers, fetchByName, fetchByName, fetchByNames, fetchByNames

Methods inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

clearCache, getFromCache, initialiseCache, initialiseCache, shutDownCache, storeInCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.bridges.fetcher.CachedFetcher

clearCache, getFromCache, initialiseCache, initialiseCache, shutDownCache, storeInCache

Methods inherited from interface psidev.psi.mi.jami.bridges.fetcher.CvTermFetcher

fetchByIdentifier, fetchByIdentifier, fetchByIdentifiers, fetchByIdentifiers, fetchByName, fetchByName, fetchByNames, fetchByNames

Field Detail

CACHE_NAME

public static final String CACHE_NAME

Constant CACHE_NAME="ontology-cache"

See Also:

Constant Field Values

Constructor Detail

CachedOlsOntologyTermFetcher

public CachedOlsOntologyTermFetcher()
                             throws BridgeFailedException

Constructor for CachedOlsOntologyTermFetcher.

Throws:

BridgeFailedException - if any.

Method Detail

fetchRootTerms

public Set<OntologyTerm> fetchRootTerms(String databaseName)
                                 throws BridgeFailedException

fetchRootTerms.

Specified by:

fetchRootTerms in interface OntologyTermFetcher

Parameters:

databaseName - : ontology database name

Returns:

a set of root terms for the ontology matching this database name

Throws:

BridgeFailedException - if any.

fetchRootTerms

public Set<OntologyTerm> fetchRootTerms(CvTerm database)
                                 throws BridgeFailedException

fetchRootTerms.

Specified by:

fetchRootTerms in interface OntologyTermFetcher

Parameters:

database - a CvTerm object.

Returns:

a Set object.

Throws:

BridgeFailedException - if any.

getDelegateFetcher

protected OntologyTermFetcher getDelegateFetcher()

Getter for the field delegateFetcher.

Overrides:

getDelegateFetcher in class CachedOlsFetcher<OntologyTerm>

Returns:

a CvTermFetcher object.