Package psidev.psi.mi.jami.bridges.ontologymanager

Class MIOntologyManager

java.lang.Object

psidev.psi.tools.ontology_manager.OntologyManagerTemplate<MIOntologyTermI,MIOntologyAccess>

psidev.psi.mi.jami.bridges.ontologymanager.MIOntologyManager

public class MIOntologyManager
extends psidev.psi.tools.ontology_manager.OntologyManagerTemplate<MIOntologyTermI,MIOntologyAccess>

JAMI extension of the ontologyManager

Since:

01/11/11

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from class psidev.psi.tools.ontology_manager.OntologyManagerTemplate

CLASSPATH_PREFIX, log, ontologies

Constructor Summary

Constructors

Constructor	Description
MIOntologyManager(InputStream configFile)	Constructor for MIOntologyManager.

Method Summary

Modifier and Type	Method	Description
protected MIOntologyAccess	findOntologyAccess(String sourceURI, String ontologyId, String ontologyName, String ontologyVersion, String format, String loaderClass)

Methods inherited from class psidev.psi.tools.ontology_manager.OntologyManagerTemplate

containsOntology, getOntologyAccess, getOntologyIDs, isUpToDate, loadOntologies, putOntology, setOntologyDirectory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MIOntologyManager

public MIOntologyManager(InputStream configFile)
                  throws psidev.psi.tools.ontology_manager.impl.local.OntologyLoaderException

Constructor for MIOntologyManager.

Parameters:

configFile - a InputStream object.

Throws:

psidev.psi.tools.ontology_manager.impl.local.OntologyLoaderException - if any.

Method Detail

findOntologyAccess

protected MIOntologyAccess findOntologyAccess(String sourceURI,
                                              String ontologyId,
                                              String ontologyName,
                                              String ontologyVersion,
                                              String format,
                                              String loaderClass)
                                       throws ClassNotFoundException

Specified by:

findOntologyAccess in class psidev.psi.tools.ontology_manager.OntologyManagerTemplate<MIOntologyTermI,MIOntologyAccess>

Throws:

ClassNotFoundException