Package psidev.psi.mi.jami.bridges.uniprot.taxonomy

Class CachedUniprotTaxonomyFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

psidev.psi.mi.jami.bridges.uniprot.taxonomy.CachedUniprotTaxonomyFetcher

All Implemented Interfaces:

CachedFetcher, OrganismFetcher

public class CachedUniprotTaxonomyFetcher
extends AbstractCachedFetcher
implements OrganismFetcher

Created with IntelliJ IDEA.

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	CACHE_NAME	Constant CACHE_NAME="uniprot-taxonomy-service-cache"

Fields inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

EHCACHE_CONFIG_FILE

Constructor Summary

Constructors

Constructor	Description
CachedUniprotTaxonomyFetcher()	Constructor for CachedUniprotTaxonomyFetcher.

Method Summary

Modifier and Type	Method	Description
Organism	fetchByTaxID(int taxID)	Finds the complete organism record matching the provided TaxID number.
Collection<Organism>	fetchByTaxIDs(Collection<Integer> taxIDs)	Finds the complete organism records matching the provided TaxID numbers.

Methods inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

clearCache, getFromCache, initialiseCache, initialiseCache, shutDownCache, storeInCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CACHE_NAME

public static final String CACHE_NAME

Constant CACHE_NAME="uniprot-taxonomy-service-cache"

See Also:

Constant Field Values

Constructor Detail

CachedUniprotTaxonomyFetcher

public CachedUniprotTaxonomyFetcher()

Constructor for CachedUniprotTaxonomyFetcher.

Method Detail

fetchByTaxID

public Organism fetchByTaxID(int taxID)
                      throws BridgeFailedException

Finds the complete organism record matching the provided TaxID number.

Specified by:

fetchByTaxID in interface OrganismFetcher

Parameters:

taxID - The taxID to search for

Returns:

A matching organism, or null if one could not be found.

Throws:

BridgeFailedException - if any.

fetchByTaxIDs

public Collection<Organism> fetchByTaxIDs(Collection<Integer> taxIDs)
                                   throws BridgeFailedException

Finds the complete organism records matching the provided TaxID numbers.

Specified by:

fetchByTaxIDs in interface OrganismFetcher

Parameters:

taxIDs - A collection of taxIDs to search for.

Returns:

A collection of the matching organisms.

Throws:

BridgeFailedException - if any.