Package psidev.psi.mi.jami.enricher.impl.full

Class FullExperimentEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Experiment>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

psidev.psi.mi.jami.enricher.impl.full.FullExperimentEnricher

All Implemented Interfaces:

ExperimentEnricher, MIEnricher<Experiment>

Direct Known Subclasses:

FullExperimentUpdater, ImexExperimentUpdater

public class FullExperimentEnricher
extends MinimalExperimentEnricher

Provides full enrichment of experiment. - enrich minimal properties of experiment. See MinimalExperimentEnricher - enrich xrefs - enrich annotations - enrich confidences - enrich variable parameters

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullExperimentEnricher()	Constructor for FullExperimentEnricher.

Method Summary

Modifier and Type	Method	Description
protected void	mergerVariableParameters(Experiment experimentToEnrich, Experiment objectSource, boolean remove)	mergerVariableParameters.
protected void	processAnnotations(Experiment experimentToEnrich, Experiment objectSource)	processAnnotations.
protected void	processConfidences(Experiment experimentToEnrich, Experiment objectSource)	processConfidences.
protected void	processOtherProperties(Experiment experimentToEnrich)	processOtherProperties.
protected void	processOtherProperties(Experiment experimentToEnrich, Experiment objectSource)	processOtherProperties.
protected void	processVariableParameters(Experiment experimentToEnrich, Experiment objectSource)	processVariableParameters.
protected void	processXrefs(Experiment experimentToEnrich, Experiment objectSource)	processXrefs.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

enrich, enrich, find, getCvTermEnricher, getExperimentEnricherListener, getOrganismEnricher, getPublicationEnricher, onEnrichedVersionNotFound, processExperiment, processExperiment, processInteractionDetectionMethod, processInteractionDetectionMethod, processOrganism, processOrganism, processPublication, processPublication, setCvTermEnricher, setExperimentEnricherListener, setOrganismEnricher, setPublicationEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich

Constructor Detail

FullExperimentEnricher

public FullExperimentEnricher()

Constructor for FullExperimentEnricher.

Method Detail

processOtherProperties

protected void processOtherProperties(Experiment experimentToEnrich)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

Throws:

EnricherException - if any.

processOtherProperties

protected void processOtherProperties(Experiment experimentToEnrich,
                                      Experiment objectSource)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(Experiment experimentToEnrich,
                            Experiment objectSource)
                     throws EnricherException

processXrefs.

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processAnnotations

protected void processAnnotations(Experiment experimentToEnrich,
                                  Experiment objectSource)
                           throws EnricherException

processAnnotations.

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processConfidences

protected void processConfidences(Experiment experimentToEnrich,
                                  Experiment objectSource)
                           throws EnricherException

processConfidences.

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processVariableParameters

protected void processVariableParameters(Experiment experimentToEnrich,
                                         Experiment objectSource)
                                  throws EnricherException

processVariableParameters.

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

mergerVariableParameters

protected void mergerVariableParameters(Experiment experimentToEnrich,
                                        Experiment objectSource,
                                        boolean remove)

mergerVariableParameters.

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

remove - a boolean.