Package psidev.psi.mi.jami.enricher.impl.full

Class FullExperimentUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Experiment>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

psidev.psi.mi.jami.enricher.impl.full.FullExperimentEnricher

psidev.psi.mi.jami.enricher.impl.full.FullExperimentUpdater

All Implemented Interfaces:

ExperimentEnricher, MIEnricher<Experiment>

public class FullExperimentUpdater
extends FullExperimentEnricher

Provides full update of experiment. - update minimal properties of experiment. See MinimalExperimentUpdater - update xrefs - update annotations - update confidences - update variable parameters

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	FullExperimentUpdater()	Constructor for FullExperimentUpdater.
protected	FullExperimentUpdater(MinimalExperimentUpdater delegate)	Constructor for FullExperimentUpdater.

Method Summary

Modifier and Type	Method	Description
protected MinimalExperimentUpdater	getDelegate()	Getter for the field delegate.
protected void	processAnnotations(Experiment experimentToEnrich, Experiment objectSource)	processAnnotations.
protected void	processConfidences(Experiment experimentToEnrich, Experiment objectSource)	processConfidences.
void	processExperiment(Experiment experimentToEnrich, Experiment objectSource)	processExperiment.
protected void	processVariableParameters(Experiment experimentToEnrich, Experiment objectSource)	processVariableParameters.
protected void	processXrefs(Experiment experimentToEnrich, Experiment objectSource)	processXrefs.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullExperimentEnricher

mergerVariableParameters, processOtherProperties, processOtherProperties

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

enrich, enrich, find, getCvTermEnricher, getExperimentEnricherListener, getOrganismEnricher, getPublicationEnricher, onEnrichedVersionNotFound, processExperiment, processInteractionDetectionMethod, processInteractionDetectionMethod, processOrganism, processOrganism, processPublication, processPublication, setCvTermEnricher, setExperimentEnricherListener, setOrganismEnricher, setPublicationEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich

Constructor Detail

FullExperimentUpdater

public FullExperimentUpdater()

Constructor for FullExperimentUpdater.

FullExperimentUpdater

protected FullExperimentUpdater(MinimalExperimentUpdater delegate)

Constructor for FullExperimentUpdater.

Parameters:

delegate - a MinimalExperimentUpdater object.

Method Detail

processExperiment

public void processExperiment(Experiment experimentToEnrich,
                              Experiment objectSource)
                       throws EnricherException

processExperiment.

Overrides:

processExperiment in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(Experiment experimentToEnrich,
                            Experiment objectSource)
                     throws EnricherException

processXrefs.

Overrides:

processXrefs in class FullExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processAnnotations

protected void processAnnotations(Experiment experimentToEnrich,
                                  Experiment objectSource)
                           throws EnricherException

processAnnotations.

Overrides:

processAnnotations in class FullExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processConfidences

protected void processConfidences(Experiment experimentToEnrich,
                                  Experiment objectSource)
                           throws EnricherException

processConfidences.

Overrides:

processConfidences in class FullExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processVariableParameters

protected void processVariableParameters(Experiment experimentToEnrich,
                                         Experiment objectSource)
                                  throws EnricherException

processVariableParameters.

Overrides:

processVariableParameters in class FullExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

getDelegate

protected MinimalExperimentUpdater getDelegate()

Getter for the field delegate.

Returns:

a MinimalExperimentUpdater object.