Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalExperimentUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Experiment>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentUpdater

All Implemented Interfaces:

ExperimentEnricher, MIEnricher<Experiment>

public class MinimalExperimentUpdater
extends MinimalExperimentEnricher

Provides minimal update of experiment. - update publication using Publication enricher if not null. Will override an existing publication with the publication loaded with the fetched experiment if it is different (see DefaultCuratedPublicationComparator) - update interaction detection method using CvTerm enricher if not null. Will override an existing interaction detection method with the interaction detection method loaded with the fetched experiment if it is different (see DefaultCvTermComparator) - enrich host organism using Organism enricher if not null. Will override an existing host organism with the host organism loaded with the fetched experiment if it is different (see DefaultOrganismComparator) It will ignore all other properties of a Experiment

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalExperimentUpdater()	Constructor for MinimalExperimentUpdater.

Method Summary

Modifier and Type	Method	Description
protected void	processInteractionDetectionMethod(Experiment experimentToEnrich, Experiment objectSource)	processInteractionDetectionMethod.
protected void	processOrganism(Experiment experimentToEnrich, Experiment objectSource)	processOrganism.
protected void	processPublication(Experiment experimentToEnrich, Experiment objectSource)	processPublication.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalExperimentEnricher

enrich, enrich, find, getCvTermEnricher, getExperimentEnricherListener, getOrganismEnricher, getPublicationEnricher, onEnrichedVersionNotFound, processExperiment, processExperiment, processInteractionDetectionMethod, processOrganism, processOtherProperties, processOtherProperties, processPublication, setCvTermEnricher, setExperimentEnricherListener, setOrganismEnricher, setPublicationEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich

Constructor Detail

MinimalExperimentUpdater

public MinimalExperimentUpdater()

Constructor for MinimalExperimentUpdater.

Method Detail

processInteractionDetectionMethod

protected void processInteractionDetectionMethod(Experiment experimentToEnrich,
                                                 Experiment objectSource)
                                          throws EnricherException

processInteractionDetectionMethod.

Overrides:

processInteractionDetectionMethod in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processPublication

protected void processPublication(Experiment experimentToEnrich,
                                  Experiment objectSource)
                           throws EnricherException

processPublication.

Overrides:

processPublication in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.

processOrganism

protected void processOrganism(Experiment experimentToEnrich,
                               Experiment objectSource)
                        throws EnricherException

processOrganism.

Overrides:

processOrganism in class MinimalExperimentEnricher

Parameters:

experimentToEnrich - a Experiment object.

objectSource - a Experiment object.

Throws:

EnricherException - if any.