Package psidev.psi.mi.jami.imex

Class ImexInteractionUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher<I>

psidev.psi.mi.jami.enricher.impl.full.FullInteractionEnricher

psidev.psi.mi.jami.imex.ImexInteractionUpdater

All Implemented Interfaces:

InteractionEnricher, MIEnricher

public class ImexInteractionUpdater
extends FullInteractionEnricher

This enricher will update a interaction evidence having a publication with IMEx id

Since:

29/10/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ImexInteractionUpdater()	Constructor for ImexInteractionUpdater.

Method Summary

Modifier and Type	Method	Description
ImexAssigner	getImexAssigner()	Getter for the field imexAssigner.
protected void	processAnnotations(Interaction objectToEnrich, Interaction objectSource)	processAnnotations.
protected void	processChecksums(Interaction objectToEnrich, Interaction objectSource)	processChecksums.
protected void	processCreatedDate(Interaction objectToEnrich, Interaction objectSource)	processCreatedDate.
protected void	processIdentifiers(Interaction objectToEnrich, Interaction objectSource)	processIdentifiers.
protected void	processInteractionType(Interaction interactionToEnrich)	processInteractionType.
protected void	processInteractionType(Interaction objectToEnrich, Interaction objectSource)	processInteractionType.
protected void	processOtherProperties(Interaction interactionToEnrich)	The strategy used for enriching the interaction.
protected void	processParticipants(Interaction interactionToEnrich)	processParticipants.
protected void	processParticipants(Interaction objectToEnrich, Interaction objectSource)	processParticipants.
protected void	processRigid(Interaction interactionToEnrich)	processRigid.
protected void	processShortName(Interaction objectToEnrich, Interaction objectSource)	processShortName.
protected void	processUpdateDate(Interaction objectToEnrich, Interaction objectSource)	processUpdateDate.
protected void	processXrefs(Interaction objectToEnrich, Interaction objectSource)	processXrefs.
void	setImexAssigner(ImexAssigner imexAssigner)	Setter for the field imexAssigner.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullInteractionEnricher

generateRigid, getRigidGenerator, processOtherProperties

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher

enrich, enrich, enrich, getCvTermEnricher, getInteractionEnricherListener, getParticipantEnricher, processMinimalUpdates, setCvTermEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImexInteractionUpdater

public ImexInteractionUpdater()

Constructor for ImexInteractionUpdater.

Method Detail

processOtherProperties

protected void processOtherProperties(Interaction interactionToEnrich)
                               throws EnricherException

The strategy used for enriching the interaction. Can be overwritten to change the behaviour.

Overrides:

processOtherProperties in class FullInteractionEnricher

Parameters:

interactionToEnrich - The interaction being enriched.

Throws:

EnricherException - Thrown if a fetcher encounters a problem.

processChecksums

protected void processChecksums(Interaction objectToEnrich,
                                Interaction objectSource)
                         throws EnricherException

processChecksums.

Overrides:

processChecksums in class FullInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(Interaction objectToEnrich,
                            Interaction objectSource)
                     throws EnricherException

processXrefs.

Overrides:

processXrefs in class FullInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processAnnotations

protected void processAnnotations(Interaction objectToEnrich,
                                  Interaction objectSource)
                           throws EnricherException

processAnnotations.

Overrides:

processAnnotations in class FullInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processRigid

protected void processRigid(Interaction interactionToEnrich)
                     throws EnricherException

processRigid.

Overrides:

processRigid in class FullInteractionEnricher

Parameters:

interactionToEnrich - a I object.

Throws:

EnricherException - if any.

processCreatedDate

protected void processCreatedDate(Interaction objectToEnrich,
                                  Interaction objectSource)

processCreatedDate.

Overrides:

processCreatedDate in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

processUpdateDate

protected void processUpdateDate(Interaction objectToEnrich,
                                 Interaction objectSource)

processUpdateDate.

Overrides:

processUpdateDate in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

processShortName

protected void processShortName(Interaction objectToEnrich,
                                Interaction objectSource)

processShortName.

Overrides:

processShortName in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

processIdentifiers

protected void processIdentifiers(Interaction objectToEnrich,
                                  Interaction objectSource)

processIdentifiers.

Overrides:

processIdentifiers in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

processParticipants

protected void processParticipants(Interaction objectToEnrich,
                                   Interaction objectSource)
                            throws EnricherException

processParticipants.

Overrides:

processParticipants in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processInteractionType

protected void processInteractionType(Interaction objectToEnrich,
                                      Interaction objectSource)
                               throws EnricherException

processInteractionType.

Overrides:

processInteractionType in class MinimalInteractionEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processInteractionType

protected void processInteractionType(Interaction interactionToEnrich)
                               throws EnricherException

processInteractionType.

Overrides:

processInteractionType in class MinimalInteractionEnricher

Parameters:

interactionToEnrich - a I object.

Throws:

EnricherException - if any.

processParticipants

protected void processParticipants(Interaction interactionToEnrich)
                            throws EnricherException

processParticipants.

Overrides:

processParticipants in class MinimalInteractionEnricher

Parameters:

interactionToEnrich - a I object.

Throws:

EnricherException - if any.

getImexAssigner

public ImexAssigner getImexAssigner()

Getter for the field imexAssigner.

Returns:

a ImexAssigner object.

setImexAssigner

public void setImexAssigner(ImexAssigner imexAssigner)

Setter for the field imexAssigner.

Parameters:

imexAssigner - a ImexAssigner object.