Package psidev.psi.mi.jami.enricher.impl.full

Class FullInteractionEnricher<I extends Interaction>

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher<I>

psidev.psi.mi.jami.enricher.impl.full.FullInteractionEnricher<I>

All Implemented Interfaces:

InteractionEnricher<I>, MIEnricher<I>

Direct Known Subclasses:

FullInteractionUpdater, ImexInteractionUpdater

public class FullInteractionEnricher<I extends Interaction>
extends MinimalInteractionEnricher<I>

Full enricher for interactions

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullInteractionEnricher()	Constructor for FullInteractionEnricher.

Method Summary

Modifier and Type	Method	Description
protected String	generateRigid(I interactionToEnrich)	generateRigid.
protected RigidGenerator	getRigidGenerator()	Getter for the field rigidGenerator.
protected void	processAnnotations(I objectToEnrich, I objectSource)	processAnnotations.
protected void	processChecksums(I objectToEnrich, I objectSource)	processChecksums.
protected void	processOtherProperties(I interactionToEnrich)	The strategy used for enriching the interaction.
protected void	processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	processRigid(I interactionToEnrich)	processRigid.
protected void	processXrefs(I objectToEnrich, I objectSource)	processXrefs.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher

enrich, enrich, enrich, getCvTermEnricher, getInteractionEnricherListener, getParticipantEnricher, processCreatedDate, processIdentifiers, processInteractionType, processInteractionType, processMinimalUpdates, processParticipants, processParticipants, processShortName, processUpdateDate, setCvTermEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FullInteractionEnricher

public FullInteractionEnricher()

Constructor for FullInteractionEnricher.

Method Detail

processOtherProperties

protected void processOtherProperties(I interactionToEnrich)
                               throws EnricherException

The strategy used for enriching the interaction. Can be overwritten to change the behaviour.

Overrides:

processOtherProperties in class MinimalInteractionEnricher<I extends Interaction>

Parameters:

interactionToEnrich - The interaction being enriched.

Throws:

EnricherException - Thrown if a fetcher encounters a problem.

processOtherProperties

protected void processOtherProperties(I objectToEnrich,
                                      I objectSource)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalInteractionEnricher<I extends Interaction>

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processChecksums

protected void processChecksums(I objectToEnrich,
                                I objectSource)
                         throws EnricherException

processChecksums.

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(I objectToEnrich,
                            I objectSource)
                     throws EnricherException

processXrefs.

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processAnnotations

protected void processAnnotations(I objectToEnrich,
                                  I objectSource)
                           throws EnricherException

processAnnotations.

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processRigid

protected void processRigid(I interactionToEnrich)
                     throws EnricherException

processRigid.

Parameters:

interactionToEnrich - a I object.

Throws:

EnricherException - if any.

getRigidGenerator

protected RigidGenerator getRigidGenerator()

Getter for the field rigidGenerator.

Returns:

a RigidGenerator object.

generateRigid

protected String generateRigid(I interactionToEnrich)
                        throws EnricherException

generateRigid.

Parameters:

interactionToEnrich - a I object.

Returns:

a String object.

Throws:

EnricherException - if any.