Package psidev.psi.mi.jami.json.binary.elements

Class SimpleJsonBinaryInteractionEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter<I>

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionEvidenceWriter<BinaryInteractionEvidence>

psidev.psi.mi.jami.json.binary.elements.SimpleJsonBinaryInteractionEvidenceWriter

All Implemented Interfaces:

JsonElementWriter<BinaryInteractionEvidence>

public class SimpleJsonBinaryInteractionEvidenceWriter
extends SimpleJsonInteractionEvidenceWriter<BinaryInteractionEvidence>

Json writer for interaction evidences

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonBinaryInteractionEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonBinaryInteractionEvidenceWriter.
SimpleJsonBinaryInteractionEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for SimpleJsonBinaryInteractionEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
protected String[]	generateInteractionIdentifier(BinaryInteractionEvidence object, Xref preferredIdentifier)	generateInteractionIdentifier.
void	setExpansionId(Integer expansionId)	Setter for the field expansionId.
void	write(BinaryInteractionEvidence object)	write.
protected void	writeOtherExpansionMethodProperties()	writeOtherExpansionMethodProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionEvidenceWriter

getConfidenceWriter, getExperimentWriter, getParameterWriter, hasIdentifiers, initialiseDefaultParticipantWriter, setConfidenceWriter, setExperimentWriter, setParameterWriter, writeAllIdentifiers, writeOtherIdentifiers, writeOtherProperties

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter

getCvWriter, getFetcher, getIdentifierWriter, getIdGenerator, getParticipantWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, setCvWriter, setFetcher, setIdentifierWriter, setIdGenerator, setParticipantWriter, writeExpansionMethod

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonBinaryInteractionEvidenceWriter

public SimpleJsonBinaryInteractionEvidenceWriter(Writer writer,
                                                 Map<Feature,Integer> processedFeatures,
                                                 Map<String,String> processedInteractors,
                                                 Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonBinaryInteractionEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonBinaryInteractionEvidenceWriter

public SimpleJsonBinaryInteractionEvidenceWriter(Writer writer,
                                                 Map<Feature,Integer> processedFeatures,
                                                 Map<String,String> processedInteractors,
                                                 Map<Entity,Integer> processedParticipants,
                                                 IncrementalIdGenerator idGenerator)

Constructor for SimpleJsonBinaryInteractionEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

setExpansionId

public void setExpansionId(Integer expansionId)

Setter for the field expansionId.

Parameters:

expansionId - a Integer object.

writeOtherExpansionMethodProperties

protected void writeOtherExpansionMethodProperties()
                                            throws IOException

writeOtherExpansionMethodProperties.

Overrides:

writeOtherExpansionMethodProperties in class SimpleJsonInteractionWriter<BinaryInteractionEvidence>

Throws:

IOException - if any.

generateInteractionIdentifier

protected String[] generateInteractionIdentifier(BinaryInteractionEvidence object,
                                                 Xref preferredIdentifier)

generateInteractionIdentifier.

Overrides:

generateInteractionIdentifier in class SimpleJsonInteractionWriter<BinaryInteractionEvidence>

Parameters:

object - a I object.

preferredIdentifier - a Xref object.

Returns:

an array of String objects.

write

public void write(BinaryInteractionEvidence object)
           throws IOException

write.

Specified by:

write in interface JsonElementWriter<BinaryInteractionEvidence>

Overrides:

write in class SimpleJsonInteractionWriter<BinaryInteractionEvidence>

Parameters:

object - a I object.

Throws:

IOException - if any.