Package psidev.psi.mi.jami.json.elements

Class SimpleJsonInteractionEvidenceWriter<I extends InteractionEvidence>

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter<I>

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionEvidenceWriter<I>

All Implemented Interfaces:

JsonElementWriter<I>

Direct Known Subclasses:

SimpleJsonBinaryInteractionEvidenceWriter

public class SimpleJsonInteractionEvidenceWriter<I extends InteractionEvidence>
extends SimpleJsonInteractionWriter<I>

Json writer for interaction evidences

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonInteractionEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonInteractionEvidenceWriter.
SimpleJsonInteractionEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for SimpleJsonInteractionEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
JsonElementWriter<Confidence>	getConfidenceWriter()	Getter for the field confidenceWriter.
JsonElementWriter<InteractionEvidence>	getExperimentWriter()	Getter for the field experimentWriter.
JsonElementWriter<Parameter>	getParameterWriter()	Getter for the field parameterWriter.
protected boolean	hasIdentifiers(I object)	hasIdentifiers.
protected void	initialiseDefaultParticipantWriter()	initialiseDefaultParticipantWriter.
void	setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	setExperimentWriter(JsonElementWriter<InteractionEvidence> experimentWriter)	Setter for the field experimentWriter.
void	setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
protected void	writeAllIdentifiers(I object)	writeAllIdentifiers.
protected void	writeOtherIdentifiers(I object)	writeOtherIdentifiers.
protected void	writeOtherProperties(I object)	writeOtherProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter

generateInteractionIdentifier, getCvWriter, getFetcher, getIdentifierWriter, getIdGenerator, getParticipantWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, setCvWriter, setFetcher, setIdentifierWriter, setIdGenerator, setParticipantWriter, write, writeExpansionMethod, writeOtherExpansionMethodProperties

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonInteractionEvidenceWriter

public SimpleJsonInteractionEvidenceWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonInteractionEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonInteractionEvidenceWriter

public SimpleJsonInteractionEvidenceWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants,
                                           IncrementalIdGenerator idGenerator)

Constructor for SimpleJsonInteractionEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

writeOtherProperties

protected void writeOtherProperties(I object)
                             throws IOException

writeOtherProperties.

Overrides:

writeOtherProperties in class SimpleJsonInteractionWriter<I extends InteractionEvidence>

Parameters:

object - a I object.

Throws:

IOException - if any.

initialiseDefaultParticipantWriter

protected void initialiseDefaultParticipantWriter()

initialiseDefaultParticipantWriter.

Overrides:

initialiseDefaultParticipantWriter in class SimpleJsonInteractionWriter<I extends InteractionEvidence>

getExperimentWriter

public JsonElementWriter<InteractionEvidence> getExperimentWriter()

Getter for the field experimentWriter.

Returns:

a JsonElementWriter object.

setExperimentWriter

public void setExperimentWriter(JsonElementWriter<InteractionEvidence> experimentWriter)

Setter for the field experimentWriter.

Parameters:

experimentWriter - a JsonElementWriter object.

getConfidenceWriter

public JsonElementWriter<Confidence> getConfidenceWriter()

Getter for the field confidenceWriter.

Returns:

a JsonElementWriter object.

setConfidenceWriter

public void setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)

Setter for the field confidenceWriter.

Parameters:

confidenceWriter - a JsonElementWriter object.

getParameterWriter

public JsonElementWriter<Parameter> getParameterWriter()

Getter for the field parameterWriter.

Returns:

a JsonElementWriter object.

setParameterWriter

public void setParameterWriter(JsonElementWriter<Parameter> parameterWriter)

Setter for the field parameterWriter.

Parameters:

parameterWriter - a JsonElementWriter object.

writeAllIdentifiers

protected void writeAllIdentifiers(I object)
                            throws IOException

writeAllIdentifiers.

Overrides:

writeAllIdentifiers in class SimpleJsonInteractionWriter<I extends InteractionEvidence>

Parameters:

object - a I object.

Throws:

IOException - if any.

writeOtherIdentifiers

protected void writeOtherIdentifiers(I object)
                              throws IOException

writeOtherIdentifiers.

Overrides:

writeOtherIdentifiers in class SimpleJsonInteractionWriter<I extends InteractionEvidence>

Parameters:

object - a I object.

Throws:

IOException - if any.

hasIdentifiers

protected boolean hasIdentifiers(I object)

hasIdentifiers.

Overrides:

hasIdentifiers in class SimpleJsonInteractionWriter<I extends InteractionEvidence>

Parameters:

object - a I object.

Returns:

a boolean.