Package psidev.psi.mi.jami.json.binary.elements

Class SimpleJsonBinaryInteractionWriter<I extends BinaryInteraction>

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter<I>

psidev.psi.mi.jami.json.binary.elements.SimpleJsonBinaryInteractionWriter<I>

All Implemented Interfaces:

JsonElementWriter<I>

public class SimpleJsonBinaryInteractionWriter<I extends BinaryInteraction>
extends SimpleJsonInteractionWriter<I>

Json writer for interactions

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonBinaryInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonBinaryInteractionWriter.
SimpleJsonBinaryInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for SimpleJsonBinaryInteractionWriter.

Method Summary

Modifier and Type	Method	Description
protected String[]	generateInteractionIdentifier(I object, Xref preferredIdentifier)	generateInteractionIdentifier.
void	setExpansionId(Integer expansionId)	Setter for the field expansionId.
void	write(I object)	write.
protected void	writeOtherExpansionMethodProperties()	writeOtherExpansionMethodProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter

getCvWriter, getFetcher, getIdentifierWriter, getIdGenerator, getParticipantWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, hasIdentifiers, initialiseDefaultParticipantWriter, setCvWriter, setFetcher, setIdentifierWriter, setIdGenerator, setParticipantWriter, writeAllIdentifiers, writeExpansionMethod, writeOtherIdentifiers, writeOtherProperties

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonBinaryInteractionWriter

public SimpleJsonBinaryInteractionWriter(Writer writer,
                                         Map<Feature,Integer> processedFeatures,
                                         Map<String,String> processedInteractors,
                                         Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonBinaryInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonBinaryInteractionWriter

public SimpleJsonBinaryInteractionWriter(Writer writer,
                                         Map<Feature,Integer> processedFeatures,
                                         Map<String,String> processedInteractors,
                                         Map<Entity,Integer> processedParticipants,
                                         IncrementalIdGenerator idGenerator)

Constructor for SimpleJsonBinaryInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

setExpansionId

public void setExpansionId(Integer expansionId)

Setter for the field expansionId.

Parameters:

expansionId - a Integer object.

writeOtherExpansionMethodProperties

protected void writeOtherExpansionMethodProperties()
                                            throws IOException

writeOtherExpansionMethodProperties.

Overrides:

writeOtherExpansionMethodProperties in class SimpleJsonInteractionWriter<I extends BinaryInteraction>

Throws:

IOException - if any.

generateInteractionIdentifier

protected String[] generateInteractionIdentifier(I object,
                                                 Xref preferredIdentifier)

generateInteractionIdentifier.

Overrides:

generateInteractionIdentifier in class SimpleJsonInteractionWriter<I extends BinaryInteraction>

Parameters:

object - a I object.

preferredIdentifier - a Xref object.

Returns:

an array of String objects.

write

public void write(I object)
           throws IOException

write.

Specified by:

write in interface JsonElementWriter<I extends BinaryInteraction>

Overrides:

write in class SimpleJsonInteractionWriter<I extends BinaryInteraction>

Parameters:

object - a I object.

Throws:

IOException - if any.