Package psidev.psi.mi.jami.json.binary.elements

Class SimpleJsonModelledBinaryInteractionWriter

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter<I>

psidev.psi.mi.jami.json.elements.SimpleJsonModelledInteractionWriter<ModelledBinaryInteraction>

psidev.psi.mi.jami.json.binary.elements.SimpleJsonModelledBinaryInteractionWriter

All Implemented Interfaces:

JsonElementWriter<ModelledBinaryInteraction>

public class SimpleJsonModelledBinaryInteractionWriter
extends SimpleJsonModelledInteractionWriter<ModelledBinaryInteraction>

Json writer for modelled interactions

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonModelledBinaryInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonModelledBinaryInteractionWriter.
SimpleJsonModelledBinaryInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for SimpleJsonModelledBinaryInteractionWriter.

Method Summary

Modifier and Type	Method	Description
protected String[]	generateInteractionIdentifier(ModelledBinaryInteraction object, Xref preferredIdentifier)	generateInteractionIdentifier.
void	setExpansionId(Integer expansionId)	Setter for the field expansionId.
void	write(ModelledBinaryInteraction object)	write.
protected void	writeOtherExpansionMethodProperties()	writeOtherExpansionMethodProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonModelledInteractionWriter

getConfidenceWriter, getOrganismWriter, getParameterWriter, initialiseDefaultParticipantWriter, setConfidenceWriter, setOrganismWriter, setParameterWriter, writeOtherProperties

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter

getCvWriter, getFetcher, getIdentifierWriter, getIdGenerator, getParticipantWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, hasIdentifiers, setCvWriter, setFetcher, setIdentifierWriter, setIdGenerator, setParticipantWriter, writeAllIdentifiers, writeExpansionMethod, writeOtherIdentifiers

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonModelledBinaryInteractionWriter

public SimpleJsonModelledBinaryInteractionWriter(Writer writer,
                                                 Map<Feature,Integer> processedFeatures,
                                                 Map<String,String> processedInteractors,
                                                 Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonModelledBinaryInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonModelledBinaryInteractionWriter

public SimpleJsonModelledBinaryInteractionWriter(Writer writer,
                                                 Map<Feature,Integer> processedFeatures,
                                                 Map<String,String> processedInteractors,
                                                 Map<Entity,Integer> processedParticipants,
                                                 IncrementalIdGenerator idGenerator)

Constructor for SimpleJsonModelledBinaryInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

setExpansionId

public void setExpansionId(Integer expansionId)

Setter for the field expansionId.

Parameters:

expansionId - a Integer object.

writeOtherExpansionMethodProperties

protected void writeOtherExpansionMethodProperties()
                                            throws IOException

writeOtherExpansionMethodProperties.

Overrides:

writeOtherExpansionMethodProperties in class SimpleJsonInteractionWriter<ModelledBinaryInteraction>

Throws:

IOException - if any.

generateInteractionIdentifier

protected String[] generateInteractionIdentifier(ModelledBinaryInteraction object,
                                                 Xref preferredIdentifier)

generateInteractionIdentifier.

Overrides:

generateInteractionIdentifier in class SimpleJsonInteractionWriter<ModelledBinaryInteraction>

Parameters:

object - a I object.

preferredIdentifier - a Xref object.

Returns:

an array of String objects.

write

public void write(ModelledBinaryInteraction object)
           throws IOException

write.

Specified by:

write in interface JsonElementWriter<ModelledBinaryInteraction>

Overrides:

write in class SimpleJsonInteractionWriter<ModelledBinaryInteraction>

Parameters:

object - a I object.

Throws:

IOException - if any.