Package psidev.psi.mi.jami.json.elements

Class SimpleJsonModelledInteractionWriter<I extends ModelledInteraction>

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter<I>

psidev.psi.mi.jami.json.elements.SimpleJsonModelledInteractionWriter<I>

All Implemented Interfaces:

JsonElementWriter<I>

Direct Known Subclasses:

SimpleJsonModelledBinaryInteractionWriter

public class SimpleJsonModelledInteractionWriter<I extends ModelledInteraction>
extends SimpleJsonInteractionWriter<I>

Json writer for modelled interactions

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonModelledInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonModelledInteractionWriter.
SimpleJsonModelledInteractionWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for SimpleJsonModelledInteractionWriter.

Method Summary

Modifier and Type	Method	Description
JsonElementWriter<Confidence>	getConfidenceWriter()	Getter for the field confidenceWriter.
JsonElementWriter<Organism>	getOrganismWriter()	Getter for the field organismWriter.
JsonElementWriter<Parameter>	getParameterWriter()	Getter for the field parameterWriter.
protected void	initialiseDefaultParticipantWriter()	initialiseDefaultParticipantWriter.
void	setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	setOrganismWriter(JsonElementWriter<Organism> organismWriter)	Setter for the field organismWriter.
void	setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
protected void	writeOtherProperties(I object)	writeOtherProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonInteractionWriter

generateInteractionIdentifier, getCvWriter, getFetcher, getIdentifierWriter, getIdGenerator, getParticipantWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, hasIdentifiers, setCvWriter, setFetcher, setIdentifierWriter, setIdGenerator, setParticipantWriter, write, writeAllIdentifiers, writeExpansionMethod, writeOtherExpansionMethodProperties, writeOtherIdentifiers

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonModelledInteractionWriter

public SimpleJsonModelledInteractionWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonModelledInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonModelledInteractionWriter

public SimpleJsonModelledInteractionWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants,
                                           IncrementalIdGenerator idGenerator)

Constructor for SimpleJsonModelledInteractionWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

writeOtherProperties

protected void writeOtherProperties(I object)
                             throws IOException

writeOtherProperties.

Overrides:

writeOtherProperties in class SimpleJsonInteractionWriter<I extends ModelledInteraction>

Parameters:

object - a I object.

Throws:

IOException - if any.

initialiseDefaultParticipantWriter

protected void initialiseDefaultParticipantWriter()

initialiseDefaultParticipantWriter.

Overrides:

initialiseDefaultParticipantWriter in class SimpleJsonInteractionWriter<I extends ModelledInteraction>

getOrganismWriter

public JsonElementWriter<Organism> getOrganismWriter()

Getter for the field organismWriter.

Returns:

a JsonElementWriter object.

setOrganismWriter

public void setOrganismWriter(JsonElementWriter<Organism> organismWriter)

Setter for the field organismWriter.

Parameters:

organismWriter - a JsonElementWriter object.

getConfidenceWriter

public JsonElementWriter<Confidence> getConfidenceWriter()

Getter for the field confidenceWriter.

Returns:

a JsonElementWriter object.

setConfidenceWriter

public void setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)

Setter for the field confidenceWriter.

Parameters:

confidenceWriter - a JsonElementWriter object.

getParameterWriter

public JsonElementWriter<Parameter> getParameterWriter()

Getter for the field parameterWriter.

Returns:

a JsonElementWriter object.

setParameterWriter

public void setParameterWriter(JsonElementWriter<Parameter> parameterWriter)

Setter for the field parameterWriter.

Parameters:

parameterWriter - a JsonElementWriter object.