Package psidev.psi.mi.jami.json.elements

Class SimpleJsonParticipantEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonParticipantWriter<ParticipantEvidence>

psidev.psi.mi.jami.json.elements.SimpleJsonParticipantEvidenceWriter

All Implemented Interfaces:

JsonElementWriter<ParticipantEvidence>

public class SimpleJsonParticipantEvidenceWriter
extends SimpleJsonParticipantWriter<ParticipantEvidence>

Json writer for participant evidences

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonParticipantEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonParticipantEvidenceWriter.
SimpleJsonParticipantEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator, OntologyTermFetcher fetcher)	Constructor for SimpleJsonParticipantEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
JsonElementWriter<Confidence>	getConfidenceWriter()	Getter for the field confidenceWriter.
JsonElementWriter<Organism>	getHostOrganismWriter()	Getter for the field hostOrganismWriter.
JsonElementWriter<Parameter>	getParameterWriter()	Getter for the field parameterWriter.
protected void	initialiseDefaultFeatureWriter()	initialiseDefaultFeatureWriter.
void	setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	setHostOrganismWriter(JsonElementWriter<Organism> hostOrganismWriter)	Setter for the field hostOrganismWriter.
void	setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
protected void	writeOtherProperties(ParticipantEvidence object)	writeOtherProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonParticipantWriter

getCvWriter, getFeatureWriter, getFetcher, getIdGenerator, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getStoichiometryWriter, getWriter, setCvWriter, setFeatureWriter, setIdGenerator, setStoichiometryWriter, write, writeAllFeatures, writeFeatures

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonParticipantEvidenceWriter

public SimpleJsonParticipantEvidenceWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonParticipantEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonParticipantEvidenceWriter

public SimpleJsonParticipantEvidenceWriter(Writer writer,
                                           Map<Feature,Integer> processedFeatures,
                                           Map<String,String> processedInteractors,
                                           Map<Entity,Integer> processedParticipants,
                                           IncrementalIdGenerator idGenerator,
                                           OntologyTermFetcher fetcher)

Constructor for SimpleJsonParticipantEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

fetcher - a OntologyTermFetcher object.

Method Detail

initialiseDefaultFeatureWriter

protected void initialiseDefaultFeatureWriter()

initialiseDefaultFeatureWriter.

Overrides:

initialiseDefaultFeatureWriter in class SimpleJsonParticipantWriter<ParticipantEvidence>

getParameterWriter

public JsonElementWriter<Parameter> getParameterWriter()

Getter for the field parameterWriter.

Returns:

a JsonElementWriter object.

setParameterWriter

public void setParameterWriter(JsonElementWriter<Parameter> parameterWriter)

Setter for the field parameterWriter.

Parameters:

parameterWriter - a JsonElementWriter object.

getConfidenceWriter

public JsonElementWriter<Confidence> getConfidenceWriter()

Getter for the field confidenceWriter.

Returns:

a JsonElementWriter object.

setConfidenceWriter

public void setConfidenceWriter(JsonElementWriter<Confidence> confidenceWriter)

Setter for the field confidenceWriter.

Parameters:

confidenceWriter - a JsonElementWriter object.

writeOtherProperties

protected void writeOtherProperties(ParticipantEvidence object)
                             throws IOException

writeOtherProperties.

Overrides:

writeOtherProperties in class SimpleJsonParticipantWriter<ParticipantEvidence>

Parameters:

object - a P object.

Throws:

IOException - if any.

getHostOrganismWriter

public JsonElementWriter<Organism> getHostOrganismWriter()

Getter for the field hostOrganismWriter.

Returns:

a JsonElementWriter object.

setHostOrganismWriter

public void setHostOrganismWriter(JsonElementWriter<Organism> hostOrganismWriter)

Setter for the field hostOrganismWriter.

Parameters:

hostOrganismWriter - a JsonElementWriter object.