Package psidev.psi.mi.jami.listener

Interface OrganismChangeListener

All Superinterfaces:

AliasesChangeListener<Organism>, EventListener

All Known Subinterfaces:

OrganismEnricherListener

All Known Implementing Classes:

OrganismChangeLogger, OrganismEnricherListenerManager, OrganismEnricherLogger, OrganismEnricherStatisticsWriter

public interface OrganismChangeListener
extends AliasesChangeListener<Organism>

This listener listen to Organism changes

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
void	onCellTypeUpdate(Organism organism, CvTerm oldType)	Listen to the event where the cell type has been initialised.
void	onCommonNameUpdate(Organism organism, String oldCommonName)	Listen to the event where the commonName of an organism has been changed.
void	onCompartmentUpdate(Organism organism, CvTerm oldType)	Listen to the event where the organism compartment has been initialised.
void	onScientificNameUpdate(Organism organism, String oldScientificName)	Listen to the event where the scientificName of an organism has been changed.
void	onTaxidUpdate(Organism organism, String oldTaxid)	Listen to the event where the taxid of an organism has been changed.
void	onTissueUpdate(Organism organism, CvTerm oldType)	Listen to the event where the organism tissue has been initialised.

Methods inherited from interface psidev.psi.mi.jami.listener.AliasesChangeListener

onAddedAlias, onRemovedAlias

Method Detail

onCommonNameUpdate

void onCommonNameUpdate(Organism organism,
                        String oldCommonName)

Listen to the event where the commonName of an organism has been changed.

Parameters:

organism - : updated organism

oldCommonName - : old common name

onScientificNameUpdate

void onScientificNameUpdate(Organism organism,
                            String oldScientificName)

Listen to the event where the scientificName of an organism has been changed. If oldScientificName is null, it means that the scientificName of the organism has been initialised. If the current scientificName of the organism is null, it means that the scientificName has been reset

Parameters:

organism - : updated organism

oldScientificName - : old scientific name

onTaxidUpdate

void onTaxidUpdate(Organism organism,
                   String oldTaxid)

Listen to the event where the taxid of an organism has been changed.

Parameters:

organism - : updated organism

oldTaxid - : old taxid

onCellTypeUpdate

void onCellTypeUpdate(Organism organism,
                      CvTerm oldType)

Listen to the event where the cell type has been initialised. This event happens when an organism has a new cell type

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.

onTissueUpdate

void onTissueUpdate(Organism organism,
                    CvTerm oldType)

Listen to the event where the organism tissue has been initialised. This event happens when a organism has a new tissue

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.

onCompartmentUpdate

void onCompartmentUpdate(Organism organism,
                         CvTerm oldType)

Listen to the event where the organism compartment has been initialised. This event happens when a organism has a new compartment

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.