Package psidev.psi.mi.jami.listener.impl

Class OrganismChangeLogger

java.lang.Object

psidev.psi.mi.jami.listener.impl.OrganismChangeLogger

All Implemented Interfaces:

EventListener, AliasesChangeListener<Organism>, OrganismChangeListener

Direct Known Subclasses:

OrganismEnricherLogger

public class OrganismChangeLogger
extends Object
implements OrganismChangeListener

This listener will just log organism change events

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
OrganismChangeLogger()

Method Summary

Modifier and Type	Method	Description
void	onAddedAlias(Organism organism, Alias added)	Listen to the event where an alias has been added to the object aliases.
void	onCellTypeUpdate(Organism organism, CvTerm oldType)	Listen to the event where the cell type has been initialised.
void	onCommonNameUpdate(Organism organism, String oldCommonName)	Listen to the event where the commonName of an organism has been changed.
void	onCompartmentUpdate(Organism organism, CvTerm oldType)	Listen to the event where the organism compartment has been initialised.
void	onRemovedAlias(Organism organism, Alias removed)	Listen to the event where an alias has been removed from the object aliases.
void	onScientificNameUpdate(Organism organism, String oldScientificName)	Listen to the event where the scientificName of an organism has been changed.
void	onTaxidUpdate(Organism organism, String oldTaxid)	Listen to the event where the taxid of an organism has been changed.
void	onTissueUpdate(Organism organism, CvTerm oldType)	Listen to the event where the organism tissue has been initialised.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OrganismChangeLogger

public OrganismChangeLogger()

Method Detail

onCommonNameUpdate

public void onCommonNameUpdate(Organism organism,
                               String oldCommonName)

Listen to the event where the commonName of an organism has been changed.

Specified by:

onCommonNameUpdate in interface OrganismChangeListener

Parameters:

organism - : updated organism

oldCommonName - : old common name

onScientificNameUpdate

public void onScientificNameUpdate(Organism organism,
                                   String oldScientificName)

Listen to the event where the scientificName of an organism has been changed. If oldScientificName is null, it means that the scientificName of the organism has been initialised. If the current scientificName of the organism is null, it means that the scientificName has been reset

Specified by:

onScientificNameUpdate in interface OrganismChangeListener

Parameters:

organism - : updated organism

oldScientificName - : old scientific name

onTaxidUpdate

public void onTaxidUpdate(Organism organism,
                          String oldTaxid)

Listen to the event where the taxid of an organism has been changed.

Specified by:

onTaxidUpdate in interface OrganismChangeListener

Parameters:

organism - : updated organism

oldTaxid - : old taxid

onCellTypeUpdate

public void onCellTypeUpdate(Organism organism,
                             CvTerm oldType)

Listen to the event where the cell type has been initialised. This event happens when an organism has a new cell type

Specified by:

onCellTypeUpdate in interface OrganismChangeListener

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.

onTissueUpdate

public void onTissueUpdate(Organism organism,
                           CvTerm oldType)

Listen to the event where the organism tissue has been initialised. This event happens when a organism has a new tissue

Specified by:

onTissueUpdate in interface OrganismChangeListener

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.

onCompartmentUpdate

public void onCompartmentUpdate(Organism organism,
                                CvTerm oldType)

Listen to the event where the organism compartment has been initialised. This event happens when a organism has a new compartment

Specified by:

onCompartmentUpdate in interface OrganismChangeListener

Parameters:

organism - The organism which has changed.

oldType - a CvTerm object.

onAddedAlias

public void onAddedAlias(Organism organism,
                         Alias added)

Listen to the event where an alias has been added to the object aliases.

Specified by:

onAddedAlias in interface AliasesChangeListener<Organism>

Parameters:

organism - The object which has changed.

added - The added alias.

onRemovedAlias

public void onRemovedAlias(Organism organism,
                           Alias removed)

Listen to the event where an alias has been removed from the object aliases.

Specified by:

onRemovedAlias in interface AliasesChangeListener<Organism>

Parameters:

organism - The object which has changed.

removed - The removed alias.