Package psidev.psi.mi.jami.listener.impl

Class FeatureChangeLogger<T extends Feature>

java.lang.Object

psidev.psi.mi.jami.listener.impl.FeatureChangeLogger<T>

All Implemented Interfaces:

EventListener, AliasesChangeListener<T>, AnnotationsChangeListener<T>, FeatureChangeListener<T>, IdentifiersChangeListener<T>, XrefsChangeListener<T>

Direct Known Subclasses:

FeatureEnricherLogger, FeatureEvidenceChangeLogger

public class FeatureChangeLogger<T extends Feature>
extends Object
implements FeatureChangeListener<T>

This listener will just interactor change events

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FeatureChangeLogger()

Method Summary

Modifier and Type	Method	Description
void	onAddedAlias(T protein, Alias added)	Listen to the event where an alias has been added to the object aliases.
void	onAddedAnnotation(T protein, Annotation added)	Listen to the event where an annotation has been added to the object annotations.
void	onAddedIdentifier(T protein, Xref added)	Listen to the event where an identifier has been added to the protein identifiers.
void	onAddedLinkedFeature(T protein, T added)	onAddedLinkedFeature
void	onAddedRange(T feature, Range added)	onAddedRange
void	onAddedXref(T protein, Xref added)	Listen to the event where a xref has been added to the protein xrefs.
void	onFullNameUpdate(T protein, String oldFullName)	onFullNameUpdate
void	onInterproUpdate(T feature, String oldInterpro)	onInterproUpdate
void	onRemovedAlias(T protein, Alias removed)	Listen to the event where an alias has been removed from the object aliases.
void	onRemovedAnnotation(T protein, Annotation removed)	Listen to the event where an annotation has been removed from the object annotations.
void	onRemovedIdentifier(T protein, Xref removed)	Listen to the event where an identifier has been removed from the protein identifiers.
void	onRemovedLinkedFeature(T protein, T removed)	onRemovedLinkedFeature
void	onRemovedRange(T feature, Range removed)	onRemovedRange
void	onRemovedXref(T protein, Xref removed)	Listen to the event where a xref has been removed from the interactor xrefs.
void	onRoleUpdate(T protein, CvTerm oldRole)	onRoleUpdate
void	onShortNameUpdate(T protein, String oldShortName)	onShortNameUpdate
void	onTypeUpdate(T protein, CvTerm old)	onTypeUpdate
void	onUpdatedRangePositions(T feature, Range range, Position oldStart, Position oldEnd)	onUpdatedRangePositions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureChangeLogger

public FeatureChangeLogger()

Method Detail

onShortNameUpdate

public void onShortNameUpdate(T protein,
                              String oldShortName)

onShortNameUpdate

Specified by:

onShortNameUpdate in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - : updated feature

oldShortName - : old shortName

onFullNameUpdate

public void onFullNameUpdate(T protein,
                             String oldFullName)

onFullNameUpdate

Specified by:

onFullNameUpdate in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - : updated feature

oldFullName - : old fllName

onInterproUpdate

public void onInterproUpdate(T feature,
                             String oldInterpro)

onInterproUpdate

Specified by:

onInterproUpdate in interface FeatureChangeListener<T extends Feature>

Parameters:

feature - : updated feature

oldInterpro - : old interpro

onTypeUpdate

public void onTypeUpdate(T protein,
                         CvTerm old)

onTypeUpdate

Specified by:

onTypeUpdate in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - : updated feature

old - : old type

onAddedRange

public void onAddedRange(T feature,
                         Range added)

onAddedRange

Specified by:

onAddedRange in interface FeatureChangeListener<T extends Feature>

Parameters:

feature - : updated feature

added - : added range

onRemovedRange

public void onRemovedRange(T feature,
                           Range removed)

onRemovedRange

Specified by:

onRemovedRange in interface FeatureChangeListener<T extends Feature>

Parameters:

feature - : updated feature

removed - : removed range

onUpdatedRangePositions

public void onUpdatedRangePositions(T feature,
                                    Range range,
                                    Position oldStart,
                                    Position oldEnd)

onUpdatedRangePositions

Specified by:

onUpdatedRangePositions in interface FeatureChangeListener<T extends Feature>

Parameters:

feature - : updated feature

range - : updated range

oldStart - : old start

oldEnd - : old end

onRoleUpdate

public void onRoleUpdate(T protein,
                         CvTerm oldRole)

onRoleUpdate

Specified by:

onRoleUpdate in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - : updated feature

oldRole - : old role

onAddedIdentifier

public void onAddedIdentifier(T protein,
                              Xref added)

Listen to the event where an identifier has been added to the protein identifiers.

Specified by:

onAddedIdentifier in interface IdentifiersChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

added - The added identifier

onRemovedIdentifier

public void onRemovedIdentifier(T protein,
                                Xref removed)

Listen to the event where an identifier has been removed from the protein identifiers.

Specified by:

onRemovedIdentifier in interface IdentifiersChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

removed - The removed identifier.

onAddedLinkedFeature

public void onAddedLinkedFeature(T protein,
                                 T added)

onAddedLinkedFeature

Specified by:

onAddedLinkedFeature in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - a T object.

added - a T object.

onRemovedLinkedFeature

public void onRemovedLinkedFeature(T protein,
                                   T removed)

onRemovedLinkedFeature

Specified by:

onRemovedLinkedFeature in interface FeatureChangeListener<T extends Feature>

Parameters:

protein - a T object.

removed - a T object.

onAddedXref

public void onAddedXref(T protein,
                        Xref added)

Listen to the event where a xref has been added to the protein xrefs.

Specified by:

onAddedXref in interface XrefsChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

added - The added Xref.

onRemovedXref

public void onRemovedXref(T protein,
                          Xref removed)

Listen to the event where a xref has been removed from the interactor xrefs.

Specified by:

onRemovedXref in interface XrefsChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

removed - The removed Xref.

onAddedAlias

public void onAddedAlias(T protein,
                         Alias added)

Listen to the event where an alias has been added to the object aliases.

Specified by:

onAddedAlias in interface AliasesChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

added - The added alias.

onRemovedAlias

public void onRemovedAlias(T protein,
                           Alias removed)

Listen to the event where an alias has been removed from the object aliases.

Specified by:

onRemovedAlias in interface AliasesChangeListener<T extends Feature>

Parameters:

protein - The object which has changed.

removed - The removed alias.

onAddedAnnotation

public void onAddedAnnotation(T protein,
                              Annotation added)

Listen to the event where an annotation has been added to the object annotations.

Specified by:

onAddedAnnotation in interface AnnotationsChangeListener<T extends Feature>

Parameters:

protein - : the parent of this annotation

added - : the added annotation

onRemovedAnnotation

public void onRemovedAnnotation(T protein,
                                Annotation removed)

Listen to the event where an annotation has been removed from the object annotations.

Specified by:

onRemovedAnnotation in interface AnnotationsChangeListener<T extends Feature>

Parameters:

protein - : the parent of this annotation

removed - : the removed annotation