Package psidev.psi.mi.jami.model.impl

Class DefaultFeature

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractFeature<Entity,Feature>

psidev.psi.mi.jami.model.impl.DefaultFeature

All Implemented Interfaces:

Feature<Entity,Feature>

Direct Known Subclasses:

DefaultMitabFeature

public class DefaultFeature
extends AbstractFeature<Entity,Feature>

Default implementation for feature Notes: The equals and hashcode methods have NOT been overridden because the Feature object is a complex object. To compare Feature objects, you can use some comparators provided by default: - DefaultFeatureBaseComparator - UnambiguousFeatureBaseComparator - DefaultFeatureComparator - UnambiguousFeatureComparator - AbstractFeatureBaseComparator

Since:

01/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.model.impl.AbstractFeature

AbstractFeature.FeatureIdentifierList

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Feature

ALLOSTERIC_PTM, ALLOSTERIC_PTM_MI, BINDING_SITE, BINDING_SITE_MI, BIOLOGICAL_FEATURE, BIOLOGICAL_FEATURE_MI, DECREASING_PTM, DECREASING_PTM_MI, DIRECT_BINDING, DIRECT_BINDING_MI, DISRUPTING_PTM, DISRUPTING_PTM_MI, EXPERIMENTAL_FEATURE, EXPERIMENTAL_FEATURE_MI, INCREASING_PTM, INCREASING_PTM_MI, MUTATION, MUTATION_MI, OBSERVED_PTM, OBSERVED_PTM_MI, PREREQUISITE_PTM, PREREQUISITE_PTM_MI, RESULTING_CLEAVAGE, RESULTING_CLEAVAGE_MI, RESULTING_PTM, RESULTING_PTM_MI, SUFFICIENT_BINDING, SUFFICIENT_BINDING_MI, VARIANT, VARIANT_MI

Constructor Summary

Constructors

Constructor	Description
DefaultFeature()	Constructor for DefaultFeature.
DefaultFeature(String shortName, String fullName)	Constructor for DefaultFeature.
DefaultFeature(String shortName, String fullName, String interpro)	Constructor for DefaultFeature.
DefaultFeature(String shortName, String fullName, CvTerm type)	Constructor for DefaultFeature.
DefaultFeature(String shortName, String fullName, CvTerm type, String interpro)	Constructor for DefaultFeature.
DefaultFeature(CvTerm type)	Constructor for DefaultFeature.
DefaultFeature(CvTerm type, String interpro)	Constructor for DefaultFeature.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractFeature

clearPropertiesLinkedToIdentifiers, getAliases, getAnnotations, getFullName, getIdentifiers, getInterpro, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseLinkedFeatures, initialiseLinkedFeaturesWith, initialiseRanges, initialiseRangesWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setType, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DefaultFeature

public DefaultFeature()

Constructor for DefaultFeature.

DefaultFeature

public DefaultFeature(String shortName,
                      String fullName)

Constructor for DefaultFeature.

Parameters:

shortName - a String object.

fullName - a String object.

DefaultFeature

public DefaultFeature(CvTerm type)

Constructor for DefaultFeature.

Parameters:

type - a CvTerm object.

DefaultFeature

public DefaultFeature(String shortName,
                      String fullName,
                      CvTerm type)

Constructor for DefaultFeature.

Parameters:

shortName - a String object.

fullName - a String object.

type - a CvTerm object.

DefaultFeature

public DefaultFeature(String shortName,
                      String fullName,
                      String interpro)

Constructor for DefaultFeature.

Parameters:

shortName - a String object.

fullName - a String object.

interpro - a String object.

DefaultFeature

public DefaultFeature(CvTerm type,
                      String interpro)

Constructor for DefaultFeature.

Parameters:

type - a CvTerm object.

interpro - a String object.

DefaultFeature

public DefaultFeature(String shortName,
                      String fullName,
                      CvTerm type,
                      String interpro)

Constructor for DefaultFeature.

Parameters:

shortName - a String object.

fullName - a String object.

type - a CvTerm object.

interpro - a String object.