Package psidev.psi.mi.jami.model.impl

Class Summary

Class	Description
AbstractEntity<F extends Feature>	Abstract class for Entity
AbstractFeature<P extends Entity,F extends Feature>	Abstract class for Feature
AbstractInteraction<T extends Participant>	Abstract class for interactions
AbstractParticipant<I extends Interaction,F extends Feature>	Abstract class for Participant
AbstractParticipantCandidate<P extends ParticipantPool,F extends Feature>	Abstract class for participant candidate
AbstractParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for Participant pool
DefaultAlias	Default implementation of Alias.
DefaultAllostery<T extends AllostericEffector>	Default implementation for Allostery Notes: The equals and hashcode methods have NOT been overridden because the Allostery object is a complex object.
DefaultAnnotation	Default implementation for Annotation.
DefaultBioactiveEntity	Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.
DefaultCausalRelationship	Default implementation for CausalRelationship Notes: The equals and hashcode methods have NOT been overridden because the CausalRelationship object is a complex object.
DefaultChecksum	Default implementation for Checksum Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousChecksumComparator
DefaultComplex	Default implementation for complexes Notes: The equals and hashcode methods have NOT been overridden because the Complex object is a complex object.
DefaultConfidence	Default implementation for Confidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparator
DefaultCooperativeEffect	Default implementation for CooperativeEffect Notes: The equals and hashcode methods have NOT been overridden because the CooperativeEffect object is a complex object.
DefaultCooperativityEvidence	Default implementation for CooperativityEvidence Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCooperativityEvidenceComparator
DefaultCvTerm	Default implementation for CvTerm Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparator
DefaultExperiment	Default implementation for Experiment Notes: The equals and hashcode methods have NOT been overridden because the Experiment object is a complex object.
DefaultExperimentalParticipantCandidate	Default implementation of experimental participant candidate
DefaultExperimentalParticipantPool	Default implementation of ExperimentalParticipantPool
DefaultFeature	Default implementation for feature Notes: The equals and hashcode methods have NOT been overridden because the Feature object is a complex object.
DefaultFeatureEvidence	Default implementation for FeatureEvidence Notes: The equals and hashcode methods have NOT been overridden because the FeatureEvidence object is a complex object.
DefaultFeatureModificationEffector	Default implementation for FeatureModificationEffector Notes: The equals and hashcode methods have NOT been overridden because the FeatureModificationEffector object is a complex object.
DefaultGene	Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.
DefaultInteraction	Default implementation for interaction Notes: The equals and hashcode methods have NOT been overridden because the interaction object is a complex object.
DefaultInteractionEvidence	Default implementation for InteractionEvidence Notes: The equals and hashcode methods have NOT been overridden because the InteractionEvidence object is a complex object.
DefaultInteractor	Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.
DefaultInteractorPool	Default implementation for interactor pool
DefaultModelledConfidence	Default implementation for ModelledInteraction Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousConfidenceComparator
DefaultModelledFeature	Default implementation for ModelledFeature Notes: The equals and hashcode methods have NOT been overridden because the ModelledFeature object is a complex object.
DefaultModelledInteraction	Default implemntation for ModelledInteraction Notes: The equals and hashcode methods have NOT been overridden because the ModelledInteraction object is a complex object.
DefaultModelledParameter	Default implementation for ModelledParameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparator
DefaultModelledParticipant	Default implementation for ModelledParticipant Notes: The equals and hashcode methods have NOT been overridden because the ModelledParticipant object is a complex object.
DefaultModelledParticipantCandidate	Default implementation of modelled participant candidate
DefaultModelledParticipantPool	Default implementation of ParticipantPool
DefaultMolecule	The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.
DefaultMoleculeEffector	Default implementation for MoleculeEffector Notes: The equals and hashcode methods have NOT been overridden because the MoleculeEffector object is a complex object.
DefaultNamedExperiment	Default implementation for NamedExperiment.
DefaultNamedInteraction	Default implementation for Named interaction
DefaultNamedInteractionEvidence	Default implementation for Named InteractionEvidence
DefaultNamedModelledInteraction	Default implementation of Named modelled interaction
DefaultNamedModelledParticipant	Default implementation of Named modelled participant
DefaultNamedParticipant	Default implementation of named participant.
DefaultNamedParticipantEvidence	Default implementation of named participant evidence
DefaultNucleicAcid	Default implementation for NucleicAcid.
DefaultOntologyTerm	Default implementation for ontology term Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparator
DefaultOrganism	Default implementation for organism Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousOrganismComparator
DefaultParameter	Default implementation for Parameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparator
DefaultParticipant	Default implementation for participant Notes: The equals and hashcode methods have NOT been overridden because the participant object is a complex object.
DefaultParticipantCandidate	Default implementation of participant candidate
DefaultParticipantEvidence	Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object.
DefaultParticipantPool	Default implementation of ParticipantPool
DefaultPolymer	Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.
DefaultPosition	Default implementation for Position Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousPositionComparator
DefaultPreassemby	Default implementation for Preassembly Notes: The equals and hashcode methods have NOT been overridden because the Preassembly object is a complex object.
DefaultProtein	Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.
DefaultPublication	Default implementation for a Publication Notes: The equals and hashcode methods have NOT been overridden because the Publication object is a complex object.
DefaultRange	Default implementation for Range Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousRangeAndResultingSequenceComparator
DefaultResultingSequence	Default implementation for ResultingSequence Notes: The equals and hashcode methods have been overridden to be consistent with ResultingSequenceComparator
DefaultSource	Default implementation for Source Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparator
DefaultStoichiometry	Default implementation for stoichiometry Notes: The equals and hashcode methods have been overridden to be consistent with StoichiometryComparator
DefaultVariableParameter	Default implementation for variableParameters Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousVariableParameterComparator
DefaultVariableParameterValue	Default implementation for variableValue.
DefaultVariableParameterValueSet	Default implementation for VariableParameterValueSet Notes: The equals and hashcode methods have been overridden to be consistent with VariableParameterValueSetComparator
DefaultXref	Default implementation for Xref Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousXrefComparator