Package psidev.psi.mi.jami.model.impl

Class DefaultModelledFeature

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractFeature<ModelledEntity,ModelledFeature>

psidev.psi.mi.jami.model.impl.DefaultModelledFeature

All Implemented Interfaces:

Feature<ModelledEntity,ModelledFeature>, ModelledFeature

Direct Known Subclasses:

MitabModelledFeature

public class DefaultModelledFeature
extends AbstractFeature<ModelledEntity,ModelledFeature>
implements ModelledFeature

Default implementation for ModelledFeature Notes: The equals and hashcode methods have NOT been overridden because the ModelledFeature object is a complex object. To compare ModelledFeature objects, you can use some comparators provided by default: - DefaultModelledFeatureComparator - UnambiguousModelledFeatureComparator

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.model.impl.AbstractFeature

AbstractFeature.FeatureIdentifierList

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Feature

ALLOSTERIC_PTM, ALLOSTERIC_PTM_MI, BINDING_SITE, BINDING_SITE_MI, BIOLOGICAL_FEATURE, BIOLOGICAL_FEATURE_MI, DECREASING_PTM, DECREASING_PTM_MI, DIRECT_BINDING, DIRECT_BINDING_MI, DISRUPTING_PTM, DISRUPTING_PTM_MI, EXPERIMENTAL_FEATURE, EXPERIMENTAL_FEATURE_MI, INCREASING_PTM, INCREASING_PTM_MI, MUTATION, MUTATION_MI, OBSERVED_PTM, OBSERVED_PTM_MI, PREREQUISITE_PTM, PREREQUISITE_PTM_MI, RESULTING_CLEAVAGE, RESULTING_CLEAVAGE_MI, RESULTING_PTM, RESULTING_PTM_MI, SUFFICIENT_BINDING, SUFFICIENT_BINDING_MI, VARIANT, VARIANT_MI

Constructor Summary

Constructors

Constructor	Description
DefaultModelledFeature()	Constructor for DefaultModelledFeature.
DefaultModelledFeature(String shortName, String fullName)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(String shortName, String fullName, CvTerm type)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(CvTerm type)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(ModelledParticipant participant)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(ModelledParticipant participant, String shortName, String fullName)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(ModelledParticipant participant, String shortName, String fullName, CvTerm type)	Constructor for DefaultModelledFeature.
DefaultModelledFeature(ModelledParticipant participant, CvTerm type)	Constructor for DefaultModelledFeature.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractFeature

clearPropertiesLinkedToIdentifiers, getAliases, getAnnotations, getFullName, getIdentifiers, getInterpro, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseLinkedFeatures, initialiseLinkedFeaturesWith, initialiseRanges, initialiseRangesWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setType, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Feature

getAliases, getAnnotations, getFullName, getIdentifiers, getInterpro, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, setFullName, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setType

Constructor Detail

DefaultModelledFeature

public DefaultModelledFeature(ModelledParticipant participant)

Constructor for DefaultModelledFeature.

Parameters:

participant - a ModelledParticipant object.

DefaultModelledFeature

public DefaultModelledFeature(ModelledParticipant participant,
                              String shortName,
                              String fullName)

Constructor for DefaultModelledFeature.

Parameters:

participant - a ModelledParticipant object.

shortName - a String object.

fullName - a String object.

DefaultModelledFeature

public DefaultModelledFeature(ModelledParticipant participant,
                              CvTerm type)

Constructor for DefaultModelledFeature.

Parameters:

participant - a ModelledParticipant object.

type - a CvTerm object.

DefaultModelledFeature

public DefaultModelledFeature(ModelledParticipant participant,
                              String shortName,
                              String fullName,
                              CvTerm type)

Constructor for DefaultModelledFeature.

Parameters:

participant - a ModelledParticipant object.

shortName - a String object.

fullName - a String object.

type - a CvTerm object.

DefaultModelledFeature

public DefaultModelledFeature()

Constructor for DefaultModelledFeature.

DefaultModelledFeature

public DefaultModelledFeature(String shortName,
                              String fullName)

Constructor for DefaultModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

DefaultModelledFeature

public DefaultModelledFeature(CvTerm type)

Constructor for DefaultModelledFeature.

Parameters:

type - a CvTerm object.

DefaultModelledFeature

public DefaultModelledFeature(String shortName,
                              String fullName,
                              CvTerm type)

Constructor for DefaultModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

type - a CvTerm object.