Package psidev.psi.mi.jami.model.impl

Class DefaultParticipant

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractEntity<F>

psidev.psi.mi.jami.model.impl.AbstractParticipant<Interaction,Feature>

psidev.psi.mi.jami.model.impl.DefaultParticipant

All Implemented Interfaces:

Entity<Feature>, Participant<Interaction,Feature>

Direct Known Subclasses:

DefaultNamedParticipant, MitabParticipant

public class DefaultParticipant
extends AbstractParticipant<Interaction,Feature>

Default implementation for participant Notes: The equals and hashcode methods have NOT been overridden because the participant object is a complex object. To compare participant objects, you can use some comparators provided by default: - DefaultParticipantBaseComparator - UnambiguousParticipantBaseComparator - DefaultExactParticipantBaseComparator - UnambiguousExactParticipantBaseComparator - ParticipantBaseComparator - DefaultParticipantComparator - UnambiguousParticipantComparator - DefaultExactParticipantComparator - UnambiguousExactParticipantComparator - ParticipantComparator

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors

Constructor	Description
DefaultParticipant(Interactor interactor)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultParticipant.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant

addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity

getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Entity

getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Constructor Detail

DefaultParticipant

public DefaultParticipant(Interactor interactor)

Constructor for DefaultParticipant.

Parameters:

interactor - a Interactor object.

DefaultParticipant

public DefaultParticipant(Interactor interactor,
                          CvTerm bioRole)

Constructor for DefaultParticipant.

Parameters:

interactor - a Interactor object.

bioRole - a CvTerm object.

DefaultParticipant

public DefaultParticipant(Interactor interactor,
                          Stoichiometry stoichiometry)

Constructor for DefaultParticipant.

Parameters:

interactor - a Interactor object.

stoichiometry - a Stoichiometry object.

DefaultParticipant

public DefaultParticipant(Interactor interactor,
                          CvTerm bioRole,
                          Stoichiometry stoichiometry)

Constructor for DefaultParticipant.

Parameters:

interactor - a Interactor object.

bioRole - a CvTerm object.

stoichiometry - a Stoichiometry object.