Package psidev.psi.mi.jami.tab.extension

Class MitabBinaryInteraction

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractInteraction<T>

psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction<Participant>

psidev.psi.mi.jami.binary.impl.DefaultBinaryInteraction

psidev.psi.mi.jami.tab.extension.MitabBinaryInteraction

All Implemented Interfaces:

BinaryInteraction<Participant>, FileSourceContext, Interaction<Participant>

public class MitabBinaryInteraction
extends DefaultBinaryInteraction
implements FileSourceContext

A MitabBinaryInteraction is a binaryInteraction with a MitabSourceLocator

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MitabBinaryInteraction()	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, CvTerm type)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, CvTerm type, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction

addAllParticipants, addParticipant, getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, getParticipants, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction

clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefs, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getRigid, getShortName, getUpdatedDate, getXrefs, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

MitabBinaryInteraction

public MitabBinaryInteraction()

Constructor for MitabBinaryInteraction.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              CvTerm type)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

MitabBinaryInteraction

public MitabBinaryInteraction(Participant participantA,
                              Participant participantB)

Constructor for MitabBinaryInteraction.

Parameters:

participantA - a Participant object.

participantB - a Participant object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              Participant participantA,
                              Participant participantB)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

participantA - a Participant object.

participantB - a Participant object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              CvTerm type,
                              Participant participantA,
                              Participant participantB)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

participantA - a Participant object.

participantB - a Participant object.

MitabBinaryInteraction

public MitabBinaryInteraction(CvTerm complexExpansion)

Constructor for MitabBinaryInteraction.

Parameters:

complexExpansion - a CvTerm object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              CvTerm type,
                              CvTerm complexExpansion)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

complexExpansion - a CvTerm object.

MitabBinaryInteraction

public MitabBinaryInteraction(Participant participantA,
                              Participant participantB,
                              CvTerm complexExpansion)

Constructor for MitabBinaryInteraction.

Parameters:

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              Participant participantA,
                              Participant participantB,
                              CvTerm complexExpansion)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

MitabBinaryInteraction

public MitabBinaryInteraction(String shortName,
                              CvTerm type,
                              Participant participantA,
                              Participant participantB,
                              CvTerm complexExpansion)

Constructor for MitabBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class AbstractBinaryInteraction<Participant>

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties