Package psidev.psi.mi.jami.tab.extension

Class MitabCvTerm

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultCvTerm

psidev.psi.mi.jami.tab.extension.MitabCvTerm

All Implemented Interfaces:

FileSourceContext, CvTerm

public class MitabCvTerm
extends DefaultCvTerm
implements FileSourceContext

Mitab extension for CvTerm. It contains a FileSourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
MitabCvTerm(String shortName)	Constructor for MitabCvTerm.
MitabCvTerm(String shortName, String miIdentifier)	Constructor for MitabCvTerm.
MitabCvTerm(String shortName, String fullName, String miIdentifier)	Constructor for MitabCvTerm.
MitabCvTerm(String shortName, String fullName, String db, String id)	Constructor for MitabCvTerm.
MitabCvTerm(String shortName, String fullName, Xref ontologyId)	Constructor for MitabCvTerm.
MitabCvTerm(String shortName, Xref ontologyId)	Constructor for MitabCvTerm.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultCvTerm

clearPropertiesLinkedToIdentifiers, equals, getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, hashCode, initialiseAnnotations, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseSynonyms, initialiseSynonymsWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabCvTerm

public MitabCvTerm(String shortName)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

MitabCvTerm

public MitabCvTerm(String shortName,
                   String miIdentifier)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

miIdentifier - a String object.

MitabCvTerm

public MitabCvTerm(String shortName,
                   String fullName,
                   String miIdentifier)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

miIdentifier - a String object.

MitabCvTerm

public MitabCvTerm(String shortName,
                   Xref ontologyId)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

MitabCvTerm

public MitabCvTerm(String shortName,
                   String fullName,
                   Xref ontologyId)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

MitabCvTerm

public MitabCvTerm(String shortName,
                   String fullName,
                   String db,
                   String id)

Constructor for MitabCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

db - a String object.

id - a String object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultCvTerm

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties