Uses of Class psidev.psi.mi.jami.tab.extension.MitabCvTerm (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use MitabCvTerm
Package	Description
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.extension.factory
psidev.psi.mi.jami.tab.io.parser
psidev.psi.mi.jami.tab.listener

Uses of MitabCvTerm in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource with parameters of type MitabCvTerm
Modifier and Type	Method	Description
`void`	AbstractMitabSource.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.
`void`	AbstractMitabStreamSource.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.
`void`	DefaultMitabStreamSource.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.

Method parameters in psidev.psi.mi.jami.tab.extension.datasource with type arguments of type MitabCvTerm
Modifier and Type	Method	Description
`void`	AbstractMitabSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	AbstractMitabStreamSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	DefaultMitabStreamSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.

Uses of MitabCvTerm in psidev.psi.mi.jami.tab.extension.factory

Method parameters in psidev.psi.mi.jami.tab.extension.factory with type arguments of type MitabCvTerm
Modifier and Type	Method	Description
`Interactor`	MitabInteractorFactory.`createInteractorFromInteractorTypes(Collection<MitabCvTerm> types, String name)`	Return the proper instance of the interactor if at least one type is recognized (always take the first recognized type).

Uses of MitabCvTerm in psidev.psi.mi.jami.tab.io.parser

Methods in psidev.psi.mi.jami.tab.io.parser that return MitabCvTerm
Modifier and Type	Method	Description
`MitabCvTerm`	MitabLineParser.`cvTerm(int column)`
`MitabCvTerm`	MitabLineParser.`expansion()`

Methods in psidev.psi.mi.jami.tab.io.parser that return types with arguments of type MitabCvTerm
Modifier and Type	Method	Description
`Collection<MitabCvTerm>`	MitabLineParser.`complexExpansion()`
`Collection<MitabCvTerm>`	MitabLineParser.`cvTerms(int columnNumber)`

Method parameters in psidev.psi.mi.jami.tab.io.parser with type arguments of type MitabCvTerm
Modifier and Type	Method	Description
`protected MitabExperiment`	AbstractInteractionEvidenceLineParser.`createExperimentFrom(MitabPublication publication, Collection<MitabCvTerm> detMethod, Collection<MitabOrganism> host)`	createExperimentFrom.
`protected void`	AbstractInteractionLineParser.`initialiseExpansionMethod(Collection<MitabCvTerm> expansion, T interaction)`	initialiseExpansionMethod.
`protected void`	BinaryEvidenceLineParser.`initialiseExpansionMethod(Collection<MitabCvTerm> expansion, BinaryInteractionEvidence interaction)`	initialiseExpansionMethod.
`protected void`	BinaryLineParser.`initialiseExpansionMethod(Collection<MitabCvTerm> expansion, BinaryInteraction interaction)`	initialiseExpansionMethod.
`protected void`	ModelledBinaryLineParser.`initialiseExpansionMethod(Collection<MitabCvTerm> expansion, ModelledBinaryInteraction interaction)`	initialiseExpansionMethod.

Uses of MitabCvTerm in psidev.psi.mi.jami.tab.listener

Methods in psidev.psi.mi.jami.tab.listener with parameters of type MitabCvTerm
Modifier and Type	Method	Description
`void`	MitabParserCompositeListener.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.
`void`	MitabParserListener.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.
`void`	MitabParserLogger.`onMissingExpansionId(MitabCvTerm expansion)`	onMissingExpansionId.

Method parameters in psidev.psi.mi.jami.tab.listener with type arguments of type MitabCvTerm
Modifier and Type	Method	Description
`void`	MitabParserCompositeListener.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	MitabParserListener.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	MitabParserLogger.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.