Package psidev.psi.mi.jami.tab.extension

Class MitabInteractionEvidence

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractInteraction<ParticipantEvidence>

psidev.psi.mi.jami.model.impl.DefaultInteractionEvidence

psidev.psi.mi.jami.tab.extension.MitabInteractionEvidence

All Implemented Interfaces:

FileSourceContext, Interaction<ParticipantEvidence>, InteractionEvidence

public class MitabInteractionEvidence
extends DefaultInteractionEvidence
implements FileSourceContext

Mitab extension for InteractionEvidence

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MitabInteractionEvidence()	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(String shortName)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(String shortName, CvTerm type)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(String shortName, CvTerm type, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(String shortName, Source source, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(String shortName, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName, CvTerm type)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName, CvTerm type, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName, Source source)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName, Source source, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, String shortName, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Experiment experiment, Xref imexId)	Constructor for MitabInteractionEvidence.
MitabInteractionEvidence(Xref imexId)	Constructor for MitabInteractionEvidence.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultInteractionEvidence

assignImexId, clearPropertiesLinkedToXrefs, getAvailability, getConfidences, getExperiment, getImexId, getParameters, getVariableParameterValues, initialiseExperimentalConfidences, initialiseExperimentalConfidencesWith, initialiseExperimentalParameters, initialiseExperimentalParametersWith, initialiseVariableParameterValueSets, initialiseVariableParameterValueSetsWith, initialiseXrefs, isInferred, isNegative, processAddedXrefEvent, processRemovedXrefEvent, setAvailability, setExperiment, setExperimentAndAddInteractionEvidence, setInferred, setNegative

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction

addAllParticipants, addParticipant, clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName,
                                Source source)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

source - a Source object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName,
                                CvTerm type)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

type - a CvTerm object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName,
                                Source source,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

source - a Source object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(Experiment experiment,
                                String shortName,
                                CvTerm type,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

experiment - a Experiment object.

shortName - a String object.

type - a CvTerm object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(String shortName,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

shortName - a String object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(String shortName,
                                Source source,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

shortName - a String object.

source - a Source object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence(String shortName,
                                CvTerm type,
                                Xref imexId)

Constructor for MitabInteractionEvidence.

Parameters:

shortName - a String object.

type - a CvTerm object.

imexId - a Xref object.

MitabInteractionEvidence

public MitabInteractionEvidence()

Constructor for MitabInteractionEvidence.

MitabInteractionEvidence

public MitabInteractionEvidence(String shortName)

Constructor for MitabInteractionEvidence.

Parameters:

shortName - a String object.

MitabInteractionEvidence

public MitabInteractionEvidence(String shortName,
                                CvTerm type)

Constructor for MitabInteractionEvidence.

Parameters:

shortName - a String object.

type - a CvTerm object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultInteractionEvidence

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties