Package psidev.psi.mi.jami.tab.extension

Class MitabModelledInteraction

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractInteraction<ModelledParticipant>

psidev.psi.mi.jami.model.impl.DefaultModelledInteraction

psidev.psi.mi.jami.tab.extension.MitabModelledInteraction

All Implemented Interfaces:

FileSourceContext, Interaction<ModelledParticipant>, ModelledInteraction

public class MitabModelledInteraction
extends DefaultModelledInteraction
implements FileSourceContext

Mitab extension for ModelledInteraction. It contains a FileSourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.ModelledInteraction

ECO, ECO_MI

Constructor Summary

Constructors

Constructor	Description
MitabModelledInteraction()	Constructor for MitabModelledInteraction.
MitabModelledInteraction(String shortName)	Constructor for MitabModelledInteraction.
MitabModelledInteraction(String shortName, CvTerm type)	Constructor for MitabModelledInteraction.
MitabModelledInteraction(String shortName, Source source)	Constructor for MitabModelledInteraction.
MitabModelledInteraction(String shortName, Source source, CvTerm type)	Constructor for MitabModelledInteraction.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultModelledInteraction

getCooperativeEffects, getEvidenceType, getInteractionEvidences, getModelledConfidences, getModelledParameters, getSource, initialiseCooperativeEffects, initialiseCooperativeEffectsWith, initialiseInteractionEvidences, initialiseInteractionEvidencesWith, initialiseModelledConfidences, initialiseModelledConfidencesWith, initialiseModelledParameters, initialiseModelledParametersWith, setEvidenceType, setSource

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction

addAllParticipants, addParticipant, clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefs, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

MitabModelledInteraction

public MitabModelledInteraction()

Constructor for MitabModelledInteraction.

MitabModelledInteraction

public MitabModelledInteraction(String shortName)

Constructor for MitabModelledInteraction.

Parameters:

shortName - a String object.

MitabModelledInteraction

public MitabModelledInteraction(String shortName,
                                Source source)

Constructor for MitabModelledInteraction.

Parameters:

shortName - a String object.

source - a Source object.

MitabModelledInteraction

public MitabModelledInteraction(String shortName,
                                CvTerm type)

Constructor for MitabModelledInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

MitabModelledInteraction

public MitabModelledInteraction(String shortName,
                                Source source,
                                CvTerm type)

Constructor for MitabModelledInteraction.

Parameters:

shortName - a String object.

source - a Source object.

type - a CvTerm object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class AbstractInteraction<ModelledParticipant>

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties