Package psidev.psi.mi.jami.tab.extension

Class MitabSource

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultCvTerm

psidev.psi.mi.jami.model.impl.DefaultSource

psidev.psi.mi.jami.tab.extension.MitabSource

All Implemented Interfaces:

FileSourceContext, CvTerm, Source

public class MitabSource
extends DefaultSource
implements FileSourceContext

Mitab extension of DefaultMitabSource It contains a FileSourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
MitabSource(String shortName)	Constructor for MitabSource.
MitabSource(String shortName, String miId)	Constructor for MitabSource.
MitabSource(String shortName, String fullName, String miId)	Constructor for MitabSource.
MitabSource(String shortName, String fullName, String db, String id)	Constructor for MitabSource.
MitabSource(String shortName, String fullName, String miId, String url, String address, Publication bibRef)	Constructor for MitabSource.
MitabSource(String shortName, String miId, String url, String address, Publication bibRef)	Constructor for MitabSource.
MitabSource(String shortName, String url, String address, Publication bibRef)	Constructor for MitabSource.
MitabSource(String shortName, String fullName, Xref ontologyId)	Constructor for MitabSource.
MitabSource(String shortName, String fullName, Xref ontologyId, String url, String address, Publication bibRef)	Constructor for MitabSource.
MitabSource(String shortName, Xref ontologyId)	Constructor for MitabSource.
MitabSource(String shortName, Xref ontologyId, String url, String address, Publication bibRef)	Constructor for MitabSource.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultSource

clearPropertiesLinkedToAnnotations, getPostalAddress, getPublication, getUrl, initialiseAnnotations, processAddedAnnotationEvent, processRemovedAnnotationEvent, setPostalAddress, setPublication, setUrl

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultCvTerm

clearPropertiesLinkedToIdentifiers, equals, getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, hashCode, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseSynonyms, initialiseSynonymsWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.CvTerm

getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Constructor Detail

MitabSource

public MitabSource(String shortName)

Constructor for MitabSource.

Parameters:

shortName - a String object.

MitabSource

public MitabSource(String shortName,
                   Xref ontologyId)

Constructor for MitabSource.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

MitabSource

public MitabSource(String shortName,
                   String fullName,
                   Xref ontologyId)

Constructor for MitabSource.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

MitabSource

public MitabSource(String shortName,
                   String url,
                   String address,
                   Publication bibRef)

Constructor for MitabSource.

Parameters:

shortName - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

MitabSource

public MitabSource(String shortName,
                   Xref ontologyId,
                   String url,
                   String address,
                   Publication bibRef)

Constructor for MitabSource.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

url - a String object.

address - a String object.

bibRef - a Publication object.

MitabSource

public MitabSource(String shortName,
                   String fullName,
                   Xref ontologyId,
                   String url,
                   String address,
                   Publication bibRef)

Constructor for MitabSource.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

url - a String object.

address - a String object.

bibRef - a Publication object.

MitabSource

public MitabSource(String shortName,
                   String miId)

Constructor for MitabSource.

Parameters:

shortName - a String object.

miId - a String object.

MitabSource

public MitabSource(String shortName,
                   String fullName,
                   String miId)

Constructor for MitabSource.

Parameters:

shortName - a String object.

fullName - a String object.

miId - a String object.

MitabSource

public MitabSource(String shortName,
                   String miId,
                   String url,
                   String address,
                   Publication bibRef)

Constructor for MitabSource.

Parameters:

shortName - a String object.

miId - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

MitabSource

public MitabSource(String shortName,
                   String fullName,
                   String miId,
                   String url,
                   String address,
                   Publication bibRef)

Constructor for MitabSource.

Parameters:

shortName - a String object.

fullName - a String object.

miId - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

MitabSource

public MitabSource(String shortName,
                   String fullName,
                   String db,
                   String id)

Constructor for MitabSource.

Parameters:

shortName - a String object.

fullName - a String object.

db - a String object.

id - a String object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultCvTerm

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties