Package psidev.psi.mi.jami.model.impl

Class DefaultSource

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultCvTerm

psidev.psi.mi.jami.model.impl.DefaultSource

All Implemented Interfaces:

CvTerm, Source

Direct Known Subclasses:

MitabSource

public class DefaultSource
extends DefaultCvTerm
implements Source

Default implementation for Source Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousCvTermComparator

Since:

22/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
DefaultSource(String shortName)	Constructor for DefaultSource.
DefaultSource(String shortName, String miId)	Constructor for DefaultSource.
DefaultSource(String shortName, String fullName, String miId)	Constructor for DefaultSource.
DefaultSource(String shortName, String fullName, String miId, String url, String address, Publication bibRef)	Constructor for DefaultSource.
DefaultSource(String shortName, String miId, String url, String address, Publication bibRef)	Constructor for DefaultSource.
DefaultSource(String shortName, String url, String address, Publication bibRef)	Constructor for DefaultSource.
DefaultSource(String shortName, String fullName, Xref ontologyId)	Constructor for DefaultSource.
DefaultSource(String shortName, String fullName, Xref ontologyId, String url, String address, Publication bibRef)	Constructor for DefaultSource.
DefaultSource(String shortName, Xref ontologyId)	Constructor for DefaultSource.
DefaultSource(String shortName, Xref ontologyId, String url, String address, Publication bibRef)	Constructor for DefaultSource.

Method Summary

Modifier and Type	Method	Description
protected void	clearPropertiesLinkedToAnnotations()	clearPropertiesLinkedToAnnotations
String	getPostalAddress()	Getter for the field postalAddress.
Publication	getPublication()	getPublication
String	getUrl()	Getter for the field url.
protected void	initialiseAnnotations()	initialiseAnnotations
protected void	processAddedAnnotationEvent(Annotation added)	processAddedAnnotationEvent
protected void	processRemovedAnnotationEvent(Annotation removed)	processRemovedAnnotationEvent
void	setPostalAddress(String address)	Set the postal address
void	setPublication(Publication ref)	Set the bibliographical reference
void	setUrl(String url)	Set the URL

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultCvTerm

clearPropertiesLinkedToIdentifiers, equals, getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, hashCode, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseSynonyms, initialiseSynonymsWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.CvTerm

getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Constructor Detail

DefaultSource

public DefaultSource(String shortName)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

DefaultSource

public DefaultSource(String shortName,
                     Xref ontologyId)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

DefaultSource

public DefaultSource(String shortName,
                     String fullName,
                     Xref ontologyId)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

DefaultSource

public DefaultSource(String shortName,
                     String url,
                     String address,
                     Publication bibRef)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

DefaultSource

public DefaultSource(String shortName,
                     Xref ontologyId,
                     String url,
                     String address,
                     Publication bibRef)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

url - a String object.

address - a String object.

bibRef - a Publication object.

DefaultSource

public DefaultSource(String shortName,
                     String fullName,
                     Xref ontologyId,
                     String url,
                     String address,
                     Publication bibRef)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

url - a String object.

address - a String object.

bibRef - a Publication object.

DefaultSource

public DefaultSource(String shortName,
                     String miId)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

miId - a String object.

DefaultSource

public DefaultSource(String shortName,
                     String fullName,
                     String miId)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

fullName - a String object.

miId - a String object.

DefaultSource

public DefaultSource(String shortName,
                     String miId,
                     String url,
                     String address,
                     Publication bibRef)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

miId - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

DefaultSource

public DefaultSource(String shortName,
                     String fullName,
                     String miId,
                     String url,
                     String address,
                     Publication bibRef)

Constructor for DefaultSource.

Parameters:

shortName - a String object.

fullName - a String object.

miId - a String object.

url - a String object.

address - a String object.

bibRef - a Publication object.

Method Detail

initialiseAnnotations

protected void initialiseAnnotations()

initialiseAnnotations

Overrides:

initialiseAnnotations in class DefaultCvTerm

getUrl

public String getUrl()

Getter for the field url.

Specified by:

getUrl in interface Source

Returns:

a String object.

setUrl

public void setUrl(String url)

Set the URL

Specified by:

setUrl in interface Source

Parameters:

url - : URL

getPostalAddress

public String getPostalAddress()

Getter for the field postalAddress.

Specified by:

getPostalAddress in interface Source

Returns:

a String object.

setPostalAddress

public void setPostalAddress(String address)

Set the postal address

Specified by:

setPostalAddress in interface Source

Parameters:

address - : postal Address

getPublication

public Publication getPublication()

getPublication

Specified by:

getPublication in interface Source

Returns:

a Publication object.

setPublication

public void setPublication(Publication ref)

Set the bibliographical reference

Specified by:

setPublication in interface Source

Parameters:

ref - : publication reference

processAddedAnnotationEvent

protected void processAddedAnnotationEvent(Annotation added)

processAddedAnnotationEvent

Parameters:

added - a Annotation object.

processRemovedAnnotationEvent

protected void processRemovedAnnotationEvent(Annotation removed)

processRemovedAnnotationEvent

Parameters:

removed - a Annotation object.

clearPropertiesLinkedToAnnotations

protected void clearPropertiesLinkedToAnnotations()

clearPropertiesLinkedToAnnotations