Uses of Class psidev.psi.mi.jami.tab.extension.MitabOrganism (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use MitabOrganism
Package Description

psidev.psi.mi.jami.tab.extension.datasource

psidev.psi.mi.jami.tab.io.parser

psidev.psi.mi.jami.tab.listener

Uses of MitabOrganism in psidev.psi.mi.jami.tab.extension.datasource

Method parameters in psidev.psi.mi.jami.tab.extension.datasource with type arguments of type MitabOrganism
Modifier and Type	Method	Description
`void`	AbstractMitabSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	AbstractMitabStreamSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	DefaultMitabStreamSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	AbstractMitabSource.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.
`void`	AbstractMitabStreamSource.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.
`void`	DefaultMitabStreamSource.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.

Uses of MitabOrganism in psidev.psi.mi.jami.tab.io.parser

Methods in psidev.psi.mi.jami.tab.io.parser that return MitabOrganism
Modifier and Type	Method	Description
`MitabOrganism`	MitabLineParser.`organism(int columnNumber)`

Methods in psidev.psi.mi.jami.tab.io.parser that return types with arguments of type MitabOrganism
Modifier and Type	Method	Description
`Collection<MitabOrganism>`	MitabLineParser.`taxId(int column)`

Method parameters in psidev.psi.mi.jami.tab.io.parser with type arguments of type MitabOrganism
Modifier and Type	Method	Description
`protected void`	AbstractInteractionEvidenceLineParser.`initialiseHostOrganism(Collection<MitabOrganism> organisms, MitabExperiment exp)`	initialiseHostOrganism.
`protected void`	AbstractInteractionLineParser.`initialiseOrganism(Collection<MitabOrganism> organisms, Interactor interactor)`	initialiseOrganism.

Uses of MitabOrganism in psidev.psi.mi.jami.tab.listener

Method parameters in psidev.psi.mi.jami.tab.listener with type arguments of type MitabOrganism
Modifier and Type	Method	Description
`void`	MitabParserCompositeListener.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	MitabParserListener.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	MitabParserLogger.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	MitabParserCompositeListener.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.
`void`	MitabParserListener.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.
`void`	MitabParserLogger.`onSeveralOrganismFound(Collection<MitabOrganism> organisms)`	onSeveralOrganismFound.