Package psidev.psi.mi.jami.tab.io.writer

Class LightMitab25Writer

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

psidev.psi.mi.jami.tab.io.writer.LightMitab25Writer

All Implemented Interfaces:

InteractionWriter<Interaction>

Direct Known Subclasses:

LightMitab26Writer

public class LightMitab25Writer
extends AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

The mitab 2.5 writer for light Interaction (no experimental details)

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightMitab25Writer()	Constructor for LightMitab25Writer.
LightMitab25Writer(File file)	Constructor for LightMitab25Writer.
LightMitab25Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.
LightMitab25Writer(OutputStream output)	Constructor for LightMitab25Writer.
LightMitab25Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.
LightMitab25Writer(Writer writer)	Constructor for LightMitab25Writer.
LightMitab25Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseExpansionMethod(ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightMitab25Writer

public LightMitab25Writer()

Constructor for LightMitab25Writer.

LightMitab25Writer

public LightMitab25Writer(File file)
                   throws IOException

Constructor for LightMitab25Writer.

Parameters:

file - a File object.

Throws:

IOException - if any.

LightMitab25Writer

public LightMitab25Writer(OutputStream output)

Constructor for LightMitab25Writer.

Parameters:

output - a OutputStream object.

LightMitab25Writer

public LightMitab25Writer(Writer writer)

Constructor for LightMitab25Writer.

Parameters:

writer - a Writer object.

LightMitab25Writer

public LightMitab25Writer(File file,
                          ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
                   throws IOException

Constructor for LightMitab25Writer.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

LightMitab25Writer

public LightMitab25Writer(OutputStream output,
                          ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for LightMitab25Writer.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

LightMitab25Writer

public LightMitab25Writer(Writer writer,
                          ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for LightMitab25Writer.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Specified by:

getVersion in class AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

Returns:

a MitabVersion object.

initialiseExpansionMethod

protected void initialiseExpansionMethod(ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

initialiseExpansionMethod.

Specified by:

initialiseExpansionMethod in class AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

Parameters:

expansionMethod - a ComplexExpansionMethod object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Specified by:

initialiseWriter in class AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Specified by:

initialiseOutputStream in class AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Specified by:

initialiseFile in class AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

Parameters:

file - a File object.

Throws:

IOException - if any.