Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab25ModelledWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25ModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

Direct Known Subclasses:

Mitab26ModelledWriter

public class Mitab25ModelledWriter
extends AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

The mitab 2.5 writer for ModelledInteraction

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab25ModelledWriter()	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(File file)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab25ModelledWriter

public Mitab25ModelledWriter()

Constructor for Mitab25ModelledWriter.

Mitab25ModelledWriter

public Mitab25ModelledWriter(File file)
                      throws IOException

Constructor for Mitab25ModelledWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab25ModelledWriter

public Mitab25ModelledWriter(OutputStream output)

Constructor for Mitab25ModelledWriter.

Parameters:

output - a OutputStream object.

Mitab25ModelledWriter

public Mitab25ModelledWriter(Writer writer)

Constructor for Mitab25ModelledWriter.

Parameters:

writer - a Writer object.

Mitab25ModelledWriter

public Mitab25ModelledWriter(File file,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)
                      throws IOException

Constructor for Mitab25ModelledWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab25ModelledWriter

public Mitab25ModelledWriter(OutputStream output,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)

Constructor for Mitab25ModelledWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab25ModelledWriter

public Mitab25ModelledWriter(Writer writer,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)

Constructor for Mitab25ModelledWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Specified by:

getVersion in class AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

Returns:

a MitabVersion object.

initialiseExpansionMethod

protected void initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)

initialiseExpansionMethod.

Specified by:

initialiseExpansionMethod in class AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

Parameters:

expansionMethod - a ComplexExpansionMethod object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Specified by:

initialiseWriter in class AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Specified by:

initialiseOutputStream in class AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Specified by:

initialiseFile in class AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

Parameters:

file - a File object.

Throws:

IOException - if any.