Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab26Writer

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26Writer

All Implemented Interfaces:

InteractionWriter<Interaction>

Direct Known Subclasses:

Mitab27Writer

public class Mitab26Writer
extends Mitab25Writer

The simple MITAB 2.6 writer will write interactions using the JAMI interfaces. It will not check for MITAB extended objects (such as MitabAlias and DefaultMitabFeature). The default Complex expansion method is spoke expansion.

Since:

13/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab26Writer()	Constructor for Mitab26Writer.
Mitab26Writer(File file)	Constructor for Mitab26Writer.
Mitab26Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(OutputStream output)	Constructor for Mitab26Writer.
Mitab26Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(Writer writer)	Constructor for Mitab26Writer.
Mitab26Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

close, getWriter, initialiseExpansionMethod, initialiseFile, initialiseOutputStream, initialiseWriter, reset, setInteractionEvidenceWriter, setModelledInteractionWriter, start, write

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab26Writer

public Mitab26Writer()

Constructor for Mitab26Writer.

Mitab26Writer

public Mitab26Writer(File file)
              throws IOException

Constructor for Mitab26Writer.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab26Writer

public Mitab26Writer(OutputStream output)

Constructor for Mitab26Writer.

Parameters:

output - a OutputStream object.

Mitab26Writer

public Mitab26Writer(Writer writer)

Constructor for Mitab26Writer.

Parameters:

writer - a Writer object.

Mitab26Writer

public Mitab26Writer(File file,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab26Writer.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab26Writer

public Mitab26Writer(OutputStream output,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab26Writer.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab26Writer

public Mitab26Writer(Writer writer,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab26Writer.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab25Writer

Returns:

a MitabVersion object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Overrides:

initialiseSubWriters in class Mitab25Writer