Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab27Writer

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab27Writer

All Implemented Interfaces:

InteractionWriter<Interaction>

Direct Known Subclasses:

Mitab28Writer

public class Mitab27Writer
extends Mitab26Writer

The simple MITAB 2.7 writer will write interactions using the JAMI interfaces. It will not check for MITAB extended objects (such as MitabAlias and DefaultMitabFeature). The default Complex expansion method is spoke expansion.

Since:

13/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab27Writer()	Constructor for Mitab27Writer.
Mitab27Writer(File file)	Constructor for Mitab27Writer.
Mitab27Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(OutputStream output)	Constructor for Mitab27Writer.
Mitab27Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(Writer writer)	Constructor for Mitab27Writer.
Mitab27Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

close, getWriter, initialiseExpansionMethod, initialiseFile, initialiseOutputStream, initialiseWriter, reset, setInteractionEvidenceWriter, setModelledInteractionWriter, start, write

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab27Writer

public Mitab27Writer()

Constructor for Mitab27Writer.

Mitab27Writer

public Mitab27Writer(File file)
              throws IOException

Constructor for Mitab27Writer.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab27Writer

public Mitab27Writer(OutputStream output)

Constructor for Mitab27Writer.

Parameters:

output - a OutputStream object.

Mitab27Writer

public Mitab27Writer(Writer writer)

Constructor for Mitab27Writer.

Parameters:

writer - a Writer object.

Mitab27Writer

public Mitab27Writer(File file,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab27Writer.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab27Writer

public Mitab27Writer(OutputStream output,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab27Writer.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab27Writer

public Mitab27Writer(Writer writer,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab27Writer.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab26Writer

Returns:

a MitabVersion object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Overrides:

initialiseSubWriters in class Mitab26Writer