Package psidev.psi.mi.jami.utils

Class FeatureUtils

java.lang.Object

psidev.psi.mi.jami.utils.FeatureUtils

public class FeatureUtils
extends Object

Utility class for features

Since:

04/12/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FeatureUtils()

Method Summary

Modifier and Type	Method	Description
static Feature	createDefaultFeature(String name, CvTerm featureType, Collection<Range> ranges)	createDefaultFeature
static Feature	createDefaultFeature(String name, CvTerm featureType, Range range)	createDefaultFeature
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, Collection<CvTerm> detectionMethods, Collection<Range> ranges)	createFeatureEvidence
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, Collection<CvTerm> detectionMethods, Range range)	createFeatureEvidence
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, Collection<Range> ranges)	createFeatureEvidence
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, CvTerm detectionMethod, Collection<Range> ranges)	createFeatureEvidence
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, CvTerm detectionMethod, Range range)	createFeatureEvidence
static FeatureEvidence	createFeatureEvidence(String name, CvTerm featureType, Range range)	createFeatureEvidence
static ModelledFeature	createModelledFeature(String name, CvTerm featureType, Collection<Range> ranges)	createModelledFeature
static ModelledFeature	createModelledFeature(String name, CvTerm featureType, Range range)	createModelledFeature
static boolean	isFeatureRole(Annotation annotation)	isFeatureRole

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureUtils

public FeatureUtils()

Method Detail

createDefaultFeature

public static Feature createDefaultFeature(String name,
                                           CvTerm featureType,
                                           Range range)

createDefaultFeature

Parameters:

name - a String object.

featureType - a CvTerm object.

range - a Range object.

Returns:

a Feature object.

createDefaultFeature

public static Feature createDefaultFeature(String name,
                                           CvTerm featureType,
                                           Collection<Range> ranges)

createDefaultFeature

Parameters:

name - a String object.

featureType - a CvTerm object.

ranges - a Collection object.

Returns:

a Feature object.

createModelledFeature

public static ModelledFeature createModelledFeature(String name,
                                                    CvTerm featureType,
                                                    Range range)

createModelledFeature

Parameters:

name - a String object.

featureType - a CvTerm object.

range - a Range object.

Returns:

a ModelledFeature object.

createModelledFeature

public static ModelledFeature createModelledFeature(String name,
                                                    CvTerm featureType,
                                                    Collection<Range> ranges)

createModelledFeature

Parameters:

name - a String object.

featureType - a CvTerm object.

ranges - a Collection object.

Returns:

a ModelledFeature object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    Range range)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

range - a Range object.

Returns:

a FeatureEvidence object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    Collection<Range> ranges)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

ranges - a Collection object.

Returns:

a FeatureEvidence object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    CvTerm detectionMethod,
                                                    Range range)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

detectionMethod - a CvTerm object.

range - a Range object.

Returns:

a FeatureEvidence object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    CvTerm detectionMethod,
                                                    Collection<Range> ranges)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

detectionMethod - a CvTerm object.

ranges - a Collection object.

Returns:

a FeatureEvidence object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    Collection<CvTerm> detectionMethods,
                                                    Range range)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

detectionMethods - a Collection object.

range - a Range object.

Returns:

a FeatureEvidence object.

createFeatureEvidence

public static FeatureEvidence createFeatureEvidence(String name,
                                                    CvTerm featureType,
                                                    Collection<CvTerm> detectionMethods,
                                                    Collection<Range> ranges)

createFeatureEvidence

Parameters:

name - a String object.

featureType - a CvTerm object.

detectionMethods - a Collection object.

ranges - a Collection object.

Returns:

a FeatureEvidence object.

isFeatureRole

public static boolean isFeatureRole(Annotation annotation)

isFeatureRole

Parameters:

annotation - a Annotation object.

Returns:

true if the annotation is used to describe the role of a feature in an interaction