Package psidev.psi.mi.jami.model

Interface FeatureEvidence

All Superinterfaces:

Feature<ExperimentalEntity,FeatureEvidence>

All Known Subinterfaces:

ExtendedPsiXmlFeatureEvidence

All Known Implementing Classes:

CsvFeatureEvidence, DefaultFeatureEvidence, MitabFeatureEvidence, XmlFeatureEvidence, XmlFeatureEvidence, XmlFeatureEvidence

public interface FeatureEvidence
extends Feature<ExperimentalEntity,FeatureEvidence>

The form of a molecule that was actually used to experimentally demonstrate the interaction, that may differ from the sequence described by the identifying accession number.

Since:

07/12/12

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Feature

ALLOSTERIC_PTM, ALLOSTERIC_PTM_MI, BINDING_SITE, BINDING_SITE_MI, BIOLOGICAL_FEATURE, BIOLOGICAL_FEATURE_MI, DECREASING_PTM, DECREASING_PTM_MI, DIRECT_BINDING, DIRECT_BINDING_MI, DISRUPTING_PTM, DISRUPTING_PTM_MI, EXPERIMENTAL_FEATURE, EXPERIMENTAL_FEATURE_MI, INCREASING_PTM, INCREASING_PTM_MI, MUTATION, MUTATION_MI, OBSERVED_PTM, OBSERVED_PTM_MI, PREREQUISITE_PTM, PREREQUISITE_PTM_MI, RESULTING_CLEAVAGE, RESULTING_CLEAVAGE_MI, RESULTING_PTM, RESULTING_PTM_MI, SUFFICIENT_BINDING, SUFFICIENT_BINDING_MI, VARIANT, VARIANT_MI

Method Summary

Modifier and Type	Method	Description
<C extends CvTerm> Collection<C>	getDetectionMethods()	The collection of feature detection methods.
<P extends Parameter> Collection<P>	getParameters()	Numerical parameters associated with this feature.

Methods inherited from interface psidev.psi.mi.jami.model.Feature

getAliases, getAnnotations, getFullName, getIdentifiers, getInterpro, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, setFullName, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setType

Method Detail

getDetectionMethods

<C extends CvTerm> Collection<C> getDetectionMethods()

The collection of feature detection methods. Each feature detectionMethod is a controlled vocabulary term. The collection cannot be null. If the featureEvidence does not have any detection methods, it should return an empty collection. Ex: autoradiography, predetermined feature, ...

Type Parameters:

C - a C object

Returns:

the collection of detection methods for this feature

getParameters

<P extends Parameter> Collection<P> getParameters()

Numerical parameters associated with this feature. The Collection cannot be null. If the feature does not have any parameters, the method should return an empty Collection.

Type Parameters:

P - a P object

Returns:

the parameters