Package psidev.psi.mi.jami.utils.comparator.experiment

Class UnambiguousCuratedExperimentComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.experiment.ExperimentComparator

psidev.psi.mi.jami.utils.comparator.experiment.UnambiguousCuratedExperimentComparator

All Implemented Interfaces:

Comparator<Experiment>

public class UnambiguousCuratedExperimentComparator
extends ExperimentComparator

Unambiguous curated experiments comparator It will look first at the publications using a UnambiguousCuratedPublicationComparator. If the publications are the same, it will look at the interaction detection methods using UnambiguousCvTermComparator. If the interaction detection methods are the same, it will look at the host organisms using UnambiguousOrganismComparator. If the host organisms are the same, it will look at the variableParameters using UnambiguousVariableParameterComparator. This comparator will ignore all the other properties of an experiment.

Since:

31/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousCuratedExperimentComparator()	Creates a new UnambiguousCuratedExperimentComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Experiment experiment1, Experiment experiment2)	Use UnambiguousExperimentComparator to know if two experiment are equals.
int	compare(Experiment experiment1, Experiment experiment2)	It will look first at the publications using a AbstractPublicationComparator.
UnambiguousCvTermComparator	getCvTermComparator()	Getter for the field cvTermComparator.
UnambiguousOrganismComparator	getOrganismComparator()	Getter for the field organismComparator.
UnambiguousCuratedPublicationComparator	getPublicationComparator()	Getter for the field publicationComparator.
static int	hashCode(Experiment exp)	hashCode

Methods inherited from class psidev.psi.mi.jami.utils.comparator.experiment.ExperimentComparator

getVariableParameterCollectionComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousCuratedExperimentComparator

public UnambiguousCuratedExperimentComparator()

Creates a new UnambiguousCuratedExperimentComparator. It will use UnambiguousCuratedPublicationComparator to compare publications, UnambiguousCvTermComparator to compare interaction detection methods and it will use UnambiguousOrganismComparator to compare host organisms.

Method Detail

compare

public int compare(Experiment experiment1,
                   Experiment experiment2)

Description copied from class: ExperimentComparator

It will look first at the publications using a AbstractPublicationComparator. If the publications are the same, it will look at the interaction detection methods using AbstractCvTermComparator. If the interaction detection methods are the same, it will look at the host organisms using OrganismComparator. If the host organisms are the same, it will look at the variableParameters using VariableParameterComparator. This comparator will ignore all the other properties of an experiment.

Specified by:

compare in interface Comparator<Experiment>

Overrides:

compare in class ExperimentComparator

Parameters:

experiment1 - a Experiment object.

experiment2 - a Experiment object.

Returns:

a int.

getPublicationComparator

public UnambiguousCuratedPublicationComparator getPublicationComparator()

Getter for the field publicationComparator.

Overrides:

getPublicationComparator in class ExperimentComparator

Returns:

a Comparator object.

getOrganismComparator

public UnambiguousOrganismComparator getOrganismComparator()

Getter for the field organismComparator.

Overrides:

getOrganismComparator in class ExperimentComparator

Returns:

a OrganismComparator object.

getCvTermComparator

public UnambiguousCvTermComparator getCvTermComparator()

Getter for the field cvTermComparator.

Overrides:

getCvTermComparator in class ExperimentComparator

Returns:

a Comparator object.

areEquals

public static boolean areEquals(Experiment experiment1,
                                Experiment experiment2)

Use UnambiguousExperimentComparator to know if two experiment are equals.

Parameters:

experiment1 - a Experiment object.

experiment2 - a Experiment object.

Returns:

true if the two experiment are equal

hashCode

public static int hashCode(Experiment exp)

hashCode

Parameters:

exp - a Experiment object.

Returns:

the hashcode consistent with the equals method for this comparator