Package psidev.psi.mi.jami.utils.comparator.feature

Class FeatureComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.feature.FeatureComparator

All Implemented Interfaces:

Comparator<Feature>

Direct Known Subclasses:

UnambiguousFeatureComparator

public class FeatureComparator
extends Object
implements Comparator<Feature>

Generic feature comparator. Entity features come first, then Biological features come first and then experimental features. - It uses ModelledFeatureComparator to compare biological features - It uses FeatureEvidenceComparator to compare experimental features - It uses AbstractFeatureBaseComparator to compare basic feature properties

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FeatureComparator(Comparator<Feature> featureBaseComparator, Comparator<CvTerm> cvTermComparator)	Constructor for FeatureComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Feature feature1, Feature feature2)	Biological features come first and then experimental features.
ModelledFeatureComparator	getBiologicalFeatureComparator()	Getter for the field biologicalFeatureComparator.
FeatureEvidenceComparator	getExperimentalFeatureComparator()	Getter for the field experimentalFeatureComparator.
Comparator<Feature>	getFeatureBaseComparator()	Getter for the field featureBaseComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

FeatureComparator

public FeatureComparator(Comparator<Feature> featureBaseComparator,
                         Comparator<CvTerm> cvTermComparator)

Constructor for FeatureComparator.

Parameters:

featureBaseComparator - a Comparator object.

cvTermComparator - a Comparator object.

Method Detail

getBiologicalFeatureComparator

public ModelledFeatureComparator getBiologicalFeatureComparator()

Getter for the field biologicalFeatureComparator.

Returns:

a ModelledFeatureComparator object.

getExperimentalFeatureComparator

public FeatureEvidenceComparator getExperimentalFeatureComparator()

Getter for the field experimentalFeatureComparator.

Returns:

a FeatureEvidenceComparator object.

getFeatureBaseComparator

public Comparator<Feature> getFeatureBaseComparator()

Getter for the field featureBaseComparator.

Returns:

a Comparator object.

compare

public int compare(Feature feature1,
                   Feature feature2)

Biological features come first and then experimental features. - It uses ModelledFeatureComparator to compare biological features - It uses FeatureEvidenceComparator to compare experimental features - It uses AbstractFeatureBaseComparator to compare basic feature properties

Specified by:

compare in interface Comparator<Feature>

Parameters:

feature1 - a Feature object.

feature2 - a Feature object.

Returns:

a int.