Package psidev.psi.mi.jami.utils.comparator.feature

Class UnambiguousFeatureComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.feature.FeatureComparator

psidev.psi.mi.jami.utils.comparator.feature.UnambiguousFeatureComparator

All Implemented Interfaces:

Comparator<Feature>

public class UnambiguousFeatureComparator
extends FeatureComparator

Generic unambiguous feature comparator. Biological features come first and then experimental features. - It uses UnambiguousBiologicalFeatureComparator to compare biological features - It uses UnambiguousFeatureEvidenceComparator to compare experimental features - It uses UnambiguousFeatureBaseComparator to compare basic feature properties

Since:

04/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousFeatureComparator()	Creates a UnambiguousFeatureComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Feature feature1, Feature feature2)	Use UnambiguousFeatureComparator to know if two features are equals.
int	compare(Feature feature1, Feature feature2)	Biological features come first and then experimental features.
UnambiguousFeatureBaseComparator	getFeatureBaseComparator()	Getter for the field featureBaseComparator.

Methods inherited from class psidev.psi.mi.jami.utils.comparator.feature.FeatureComparator

getBiologicalFeatureComparator, getExperimentalFeatureComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousFeatureComparator

public UnambiguousFeatureComparator()

Creates a UnambiguousFeatureComparator. It will use a UnambiguousFeatureBaseComparator to compare basic feature properties

Method Detail

getFeatureBaseComparator

public UnambiguousFeatureBaseComparator getFeatureBaseComparator()

Description copied from class: FeatureComparator

Getter for the field featureBaseComparator.

Overrides:

getFeatureBaseComparator in class FeatureComparator

Returns:

a Comparator object.

compare

public int compare(Feature feature1,
                   Feature feature2)

Biological features come first and then experimental features. - It uses UnambiguousBiologicalFeatureComparator to compare biological features - It uses UnambiguousFeatureEvidenceComparator to compare experimental features - It uses UnambiguousFeatureBaseComparator to compare basic feature properties

Specified by:

compare in interface Comparator<Feature>

Overrides:

compare in class FeatureComparator

Parameters:

feature1 - a Feature object.

feature2 - a Feature object.

Returns:

a int.

areEquals

public static boolean areEquals(Feature feature1,
                                Feature feature2)

Use UnambiguousFeatureComparator to know if two features are equals.

Parameters:

feature1 - a Feature object.

feature2 - a Feature object.

Returns:

true if the two features are equal