Package psidev.psi.mi.jami.utils.comparator.interaction

Class UnambiguousCuratedInteractionEvidenceComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interaction.InteractionEvidenceComparator

psidev.psi.mi.jami.utils.comparator.interaction.UnambiguousCuratedInteractionEvidenceComparator

All Implemented Interfaces:

Comparator<InteractionEvidence>

public class UnambiguousCuratedInteractionEvidenceComparator
extends InteractionEvidenceComparator

Unambiguous curated InteractionEvidenceComparator. It will first compare the basic interaction properties using UnambiguousCuratedInteractionBaseComparator. It will then compares the IMEx identifiers if both IMEx ids are set. If at least one IMEx id is not set, it will compare the negative properties. A negative interaction will come after a positive interaction. it will compare the experiment using UnambiguousCuratedExperimentComparator. If the experiments are the same, it will compare the participants using UnambiguousParticipantEvidenceComparator. Then it will compare the parameters using UnambiguousParameterComparator. If the parameters are the same, it will first compare the experimental variableParameters using VariableParameterValueSetComparator and then it will compare the inferred boolean value (Inferred interactions will always come after).

Since:

31/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousCuratedInteractionEvidenceComparator()	Creates a new UnambiguousCuratedInteractionEvidenceComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(InteractionEvidence interaction1, InteractionEvidence interaction2)	Use UnambiguousCuratedInteractionEvidenceComparator to know if two experimental interactions are equals.
int	compare(InteractionEvidence interaction1, InteractionEvidence interaction2)	It will first compare the basic interaction properties using UnambiguousCuratedInteractionBaseComparator.
UnambiguousCuratedExperimentComparator	getExperimentComparator()	Getter for the field experimentComparator.
UnambiguousCuratedInteractionBaseComparator	getInteractionBaseComparator()	getInteractionBaseComparator

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interaction.InteractionEvidenceComparator

getParameterCollectionComparator, getParticipantCollectionComparator, getVariableParameterValueSetCollectionComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousCuratedInteractionEvidenceComparator

public UnambiguousCuratedInteractionEvidenceComparator()

Creates a new UnambiguousCuratedInteractionEvidenceComparator. It will use a UnambiguousCuratedInteractionBaseComparator to compare basic interaction properties, UnambiguousParameterComparator to compare parameters, UnambiguousCuratedExperimentComparator to compare experiments

Method Detail

getExperimentComparator

public UnambiguousCuratedExperimentComparator getExperimentComparator()

Getter for the field experimentComparator.

Overrides:

getExperimentComparator in class InteractionEvidenceComparator

Returns:

a ExperimentComparator object.

getInteractionBaseComparator

public UnambiguousCuratedInteractionBaseComparator getInteractionBaseComparator()

Description copied from class: InteractionEvidenceComparator

getInteractionBaseComparator

Overrides:

getInteractionBaseComparator in class InteractionEvidenceComparator

Returns:

a Comparator object.

compare

public int compare(InteractionEvidence interaction1,
                   InteractionEvidence interaction2)

It will first compare the basic interaction properties using UnambiguousCuratedInteractionBaseComparator. It will then compares the IMEx identifiers if both IMEx ids are set. If at least one IMEx id is not set, it will compare the negative properties. A negative interaction will come after a positive interaction. it will compare the experiment using UnambiguousCuratedExperimentComparator. If the experiments are the same, it will compare the participants using UnambiguousParticipantEvidenceComparator. Then it will compare the parameters using UnambiguousParameterComparator. If the parameters are the same, it will first compare the experimental variableParameters using VariableParameterValueSetComparator and then it will compare the inferred boolean value (Inferred interactions will always come after).

Specified by:

compare in interface Comparator<InteractionEvidence>

Overrides:

compare in class InteractionEvidenceComparator

Parameters:

interaction1 - a InteractionEvidence object.

interaction2 - a InteractionEvidence object.

Returns:

a int.

areEquals

public static boolean areEquals(InteractionEvidence interaction1,
                                InteractionEvidence interaction2)

Use UnambiguousCuratedInteractionEvidenceComparator to know if two experimental interactions are equals.

Parameters:

interaction1 - a InteractionEvidence object.

interaction2 - a InteractionEvidence object.

Returns:

true if the two experimental interactions are equal