Package psidev.psi.mi.jami.utils.comparator.interactor

Class BioactiveEntityComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interactor.BioactiveEntityComparator

All Implemented Interfaces:

Comparator<BioactiveEntity>

Direct Known Subclasses:

UnambiguousBioactiveEntityComparator, UnambiguousExactBioactiveEntityComparator

public class BioactiveEntityComparator
extends Object
implements Comparator<BioactiveEntity>

Unambiguous bioactive entity comparator. It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties. If the basic interactor properties are the same, It will look first for CHEBI identifier (the interactor with a non null CHEBI identifier will always come first). If the CHEBI identifiers are not set, it will look at the standard inchi key (the interactor with a non null standard inchi key will always come first). If the standard inchi keys are identical, it will look at the smile (the interactor with a non null smile will always come first). If the smiles are identical, it will look at the standard Inchi (the interactor with a non null standard inchi will always come first). This comparator will ignore all the other properties of an interactor.

Since:

15/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
BioactiveEntityComparator(Comparator<Interactor> interactorBaseComparator)	Creates a new UnambiguousBioactiveEntityComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(BioactiveEntity bioactiveEntity1, BioactiveEntity bioactiveEntity2)	It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties.
Comparator<Interactor>	getInteractorComparator()	getInteractorComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

BioactiveEntityComparator

public BioactiveEntityComparator(Comparator<Interactor> interactorBaseComparator)

Creates a new UnambiguousBioactiveEntityComparator. It will use an UnambiguousInteractorBaseComparator

Parameters:

interactorBaseComparator - a Comparator object.

Method Detail

getInteractorComparator

public Comparator<Interactor> getInteractorComparator()

getInteractorComparator

Returns:

a Comparator object.

compare

public int compare(BioactiveEntity bioactiveEntity1,
                   BioactiveEntity bioactiveEntity2)

It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties. If the basic interactor properties are the same, It will look first for CHEBI identifier (the interactor with a non null CHEBI identifier will always come first). If the CHEBI identifiers are not set, it will look at the standard inchi key (the interactor with a non null standard inchi key will always come first). If the standard inchi keys are identical, it will look at the smile (the interactor with a non null smile will always come first). If the smiles are identical, it will look at the standard Inchi (the interactor with a non null standard inchi will always come first). This comparator will ignore all the other properties of an interactor.

Specified by:

compare in interface Comparator<BioactiveEntity>

Parameters:

bioactiveEntity1 - a BioactiveEntity object.

bioactiveEntity2 - a BioactiveEntity object.

Returns:

a int.