Package psidev.psi.mi.jami.utils.comparator.interactor

Class UnambiguousExactBioactiveEntityComparator

  • All Implemented Interfaces:
    Comparator<BioactiveEntity>
    public class UnambiguousExactBioactiveEntityComparator
extends BioactiveEntityComparator
    unambiguous Exact bioactive entity comparator. It will first use UnambiguousExactInteractorBaseComparator to compare the basic interactor properties. If the basic interactor properties are the same, It will look first for CHEBI identifier (the interactor with a non null CHEBI identifier will always come first). If the CHEBI identifiers are not set, it will look at the standard inchi key (the interactor with a non null standard inchi key will always come first). If the standard inchi keys are identical, it will look at the smile (the interactor with a non null smile will always come first). If the smiles are identical, it will look at the standard Inchi (the interactor with a non null standard inchi will always come first). This comparator will ignore all the other properties of an interactor.
    Since:
    17/01/13
    Version:
    $Id$
    Author:
    Marine Dumousseau (marine@ebi.ac.uk)

    • Constructor Detail

      • UnambiguousExactBioactiveEntityComparator

        public UnambiguousExactBioactiveEntityComparator()
        Creates a new UnambiguousExactBioactiveEntityComparator. It will use a UnambiguousExactInteractorBaseComparator.

    • Method Detail

      • compare

        public int compare​(BioactiveEntity bioactiveEntity1,
                   BioactiveEntity bioactiveEntity2)
        Description copied from class: BioactiveEntityComparator
        It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties. If the basic interactor properties are the same, It will look first for CHEBI identifier (the interactor with a non null CHEBI identifier will always come first). If the CHEBI identifiers are not set, it will look at the standard inchi key (the interactor with a non null standard inchi key will always come first). If the standard inchi keys are identical, it will look at the smile (the interactor with a non null smile will always come first). If the smiles are identical, it will look at the standard Inchi (the interactor with a non null standard inchi will always come first). This comparator will ignore all the other properties of an interactor.
        Specified by:
        compare in interface Comparator<BioactiveEntity>
        Overrides:
        compare in class BioactiveEntityComparator
        Parameters:
        bioactiveEntity1 - a BioactiveEntity object.
        bioactiveEntity2 - a BioactiveEntity object.
        Returns:
        a int.

      • areEquals

        public static boolean areEquals​(BioactiveEntity entity1,
                                BioactiveEntity entity2)
        Use UnambiguousExactBioactiveEntityComparator to know if two bioactive entities are equals.
        Parameters:
        entity1 - a BioactiveEntity object.
        entity2 - a BioactiveEntity object.
        Returns:
        true if the two bioactive entities are equal