Package psidev.psi.mi.jami.utils.comparator.interactor

Class ExactInteractorBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interactor.ExactInteractorBaseComparator

All Implemented Interfaces:

Comparator<Interactor>

Direct Known Subclasses:

UnambiguousExactInteractorBaseComparator

public class ExactInteractorBaseComparator
extends Object
implements Comparator<Interactor>

Interactor base comparator. It will first compare the interactor types using UnambiguousCvTermComparator. If both types are equal, it will compare organisms using OrganismTaxIdComparator. If both organisms are equal, it will use a UnambiguousInteractorBaseComparator to compare basic Interactor properties.

Since:

17/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExactInteractorBaseComparator(OrganismTaxIdComparator organismComparator, Comparator<CvTerm> typeComparator, InteractorBaseComparator interactorBaseComparator)	Creates a new UnambiguousExactInteractorBaseComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Interactor interactor1, Interactor interactor2)	It will first compare the interactor types using UnambiguousCvTermComparator.
InteractorBaseComparator	getInteractorBaseComparator()	Getter for the field interactorBaseComparator.
OrganismTaxIdComparator	getOrganismComparator()	Getter for the field organismComparator.
Comparator<CvTerm>	getTypeComparator()	Getter for the field typeComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

ExactInteractorBaseComparator

public ExactInteractorBaseComparator(OrganismTaxIdComparator organismComparator,
                                     Comparator<CvTerm> typeComparator,
                                     InteractorBaseComparator interactorBaseComparator)

Creates a new UnambiguousExactInteractorBaseComparator. It will use a UnambiguousInteractorBaseComparator to compare basic interactor properties, a OrganismTaxIdComparator to compare organisms and a UnambiguousCvTermComparator to compare checksum types and interactor types

Parameters:

organismComparator - a OrganismTaxIdComparator object.

typeComparator - a Comparator object.

interactorBaseComparator - a InteractorBaseComparator object.

Method Detail

getInteractorBaseComparator

public InteractorBaseComparator getInteractorBaseComparator()

Getter for the field interactorBaseComparator.

Returns:

a InteractorBaseComparator object.

getTypeComparator

public Comparator<CvTerm> getTypeComparator()

Getter for the field typeComparator.

Returns:

a Comparator object.

getOrganismComparator

public OrganismTaxIdComparator getOrganismComparator()

Getter for the field organismComparator.

Returns:

a OrganismTaxIdComparator object.

compare

public int compare(Interactor interactor1,
                   Interactor interactor2)

It will first compare the interactor types using UnambiguousCvTermComparator. If both types are equal, it will compare organisms using OrganismTaxIdComparator. If both organisms are equal, it will use a UnambiguousInteractorBaseComparator to compare basic Interactor properties.

Specified by:

compare in interface Comparator<Interactor>

Parameters:

interactor1 - a Interactor object.

interactor2 - a Interactor object.

Returns:

a int.