UnambiguousNucleicAcidComparator (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.utils.comparator.interactor.NucleicAcidComparator
- - psidev.psi.mi.jami.utils.comparator.interactor.UnambiguousNucleicAcidComparator

All Implemented Interfaces:

Comparator<NucleicAcid>
```
public class UnambiguousNucleicAcidComparator
extends NucleicAcidComparator
```
Unambiguous nucleic acids comparator. It will first use UnambiguousPolymerComparator to compare the basic interactor properties. If the basic polymer properties are the same, It will look for DDBJ/EMBL/Genbank identifier. If the DDBJ/EMBL/Genbank identifiers are identical, it will look at the Refseq identifiers.
Since:
```
15/01/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

UnambiguousNucleicAcidComparator()
Creates a new UnambiguousNucleicAcidComparator.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static boolean`	`areEquals(NucleicAcid nucleicAcid1, NucleicAcid nucleicAcid2)`	Use UnambiguousNucleicAcidComparator to know if two nucleic acids are equals.
`UnambiguousPolymerComparator`	`getInteractorComparator()`	getInteractorComparator

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interactor.NucleicAcidComparator
compare

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator
equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

- Constructor Detail
  - UnambiguousNucleicAcidComparator
```
public UnambiguousNucleicAcidComparator()
```
    Creates a new UnambiguousNucleicAcidComparator. It will uses a UnambiguousInteractorBaseComparator to compare interactor properties and a OrganismTaxIdComparator to compares organism.
- Method Detail
  - getInteractorComparator
```
public UnambiguousPolymerComparator getInteractorComparator()
```
    getInteractorComparator
    
    Overrides:
    
    getInteractorComparator in class NucleicAcidComparator
    
    Returns:
    
    a UnambiguousPolymerComparator object.
  - areEquals
```
public static boolean areEquals(NucleicAcid nucleicAcid1,
                                NucleicAcid nucleicAcid2)
```
    Use UnambiguousNucleicAcidComparator to know if two nucleic acids are equals.
    
    Parameters:
    
    nucleicAcid1 - a NucleicAcid object.
    
    nucleicAcid2 - a NucleicAcid object.
    
    Returns:
    
    true if the two nucleic acids are equal