Package psidev.psi.mi.jami.model

Interface NucleicAcid

All Superinterfaces:

Interactor, Molecule, Polymer

All Known Implementing Classes:

DefaultNucleicAcid, MitabNucleicAcid, XmlNucleicAcid, XmlNucleicAcid, XmlNucleicAcid

public interface NucleicAcid
extends Polymer

Polymers of nucleotides which can interact with other molecules

Since:

23/11/12

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	NULCEIC_ACID	Constant NULCEIC_ACID="nucleic acid"
static String	NULCEIC_ACID_MI	Constant NULCEIC_ACID_MI="MI:0318"

Fields inherited from interface psidev.psi.mi.jami.model.Interactor

UNKNOWN_INTERACTOR, UNKNOWN_INTERACTOR_MI

Fields inherited from interface psidev.psi.mi.jami.model.Polymer

POLYMER, POLYMER_MI

Method Summary

Modifier and Type	Method	Description
String	getDdbjEmblGenbank()	The unique DDBJ/EMBL/GemBank identifier which identifies the nucleic acid.
String	getRefseq()	The unique Refseq identifier which identifies the nucleic acid.
void	setDdbjEmblGenbank(String id)	Sets the DDBJ/EMBL/GemBank identifier.
void	setRefseq(String id)	Sets the Refseq identifier.

Methods inherited from interface psidev.psi.mi.jami.model.Interactor

getAliases, getAnnotations, getChecksums, getFullName, getIdentifiers, getInteractorType, getOrganism, getPreferredIdentifier, getPreferredName, getShortName, getXrefs, setFullName, setInteractorType, setOrganism, setShortName

Methods inherited from interface psidev.psi.mi.jami.model.Polymer

getSequence, setSequence

Field Detail

NULCEIC_ACID

static final String NULCEIC_ACID

Constant NULCEIC_ACID="nucleic acid"

See Also:

Constant Field Values

NULCEIC_ACID_MI

static final String NULCEIC_ACID_MI

Constant NULCEIC_ACID_MI="MI:0318"

See Also:

Constant Field Values

Method Detail

getDdbjEmblGenbank

String getDdbjEmblGenbank()

The unique DDBJ/EMBL/GemBank identifier which identifies the nucleic acid. It can be null if it is not known and in such a case, the sequence should be provided. It is a shortcut which should point to the first DDBJ/EMBL/GenBank identifier in the collection of identifiers.

Returns:

the DDBJ/EMBL/GemBank identifier

setDdbjEmblGenbank

void setDdbjEmblGenbank(String id)

Sets the DDBJ/EMBL/GemBank identifier. It will remove the old DDBJ/EMBL/GemBank identifier from the collection of identifiers and replace it with the new DDBJ/EMBL/GemBank identifier. If the new DDBJ/EMBL/GemBank identifier is null, all the existing DDBJ/EMBL/GemBank identifiers will be removed from the collection of identifiers

Parameters:

id - : DDBJ/EMBL/GemBank identifier

getRefseq

String getRefseq()

The unique Refseq identifier which identifies the nucleic acid. It can be null if it is not known and in such a case, the sequence should be provided. It is a shortcut which should point to the first refseq identifier in the collection of identifiers.

Returns:

the DDBJ/EMBL/GemBank identifier

setRefseq

void setRefseq(String id)

Sets the Refseq identifier. It will remove the old refseq identifier from the collection of identifiers and replace it with the new refseq identifier. If the new refseq identifier is null, all the existing refseq identifiers will be removed from the collection of identifiers

Parameters:

id - : Refseq identifier