UnambiguousProteinComparator (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.utils.comparator.interactor.ProteinComparator
- - psidev.psi.mi.jami.utils.comparator.interactor.UnambiguousProteinComparator

All Implemented Interfaces:

Comparator<Protein>
```
public class UnambiguousProteinComparator
extends ProteinComparator
```
Unambiguous proteins comparator. It will first use UnambiguousPolymerComparator to compare the basic interactor properties If the basic interactor properties are the same, It will look for uniprotkb identifier (The interactor with non null uniprot id will always come first). If the uniprotkb identifiers are identical, it will look at the Refseq identifiers (The interactor with non null refseq id will always come first). If the Refseq and uniport identifiers are not set, it will look at the rogids (The interactor with non null rogid will always come first). If the rogids are identical, it will look at the gene names (The interactor with non null gene name will always come first).
Since:
```
15/01/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

UnambiguousProteinComparator()
Creates a new UnambiguousProteinComparator.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static boolean`	`areEquals(Protein protein1, Protein protein2)`	Use UnambiguousProteinComparator to know if two proteins are equals.
`UnambiguousPolymerComparator`	`getInteractorComparator()`	getInteractorComparator

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interactor.ProteinComparator
compare

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator
equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

- Constructor Detail
  - UnambiguousProteinComparator
```
public UnambiguousProteinComparator()
```
    Creates a new UnambiguousProteinComparator. It will uses a UnambiguousPolymerComparator to compare interactor properties and a OrganismTaxIdComparator to compares organism.
- Method Detail
  - getInteractorComparator
```
public UnambiguousPolymerComparator getInteractorComparator()
```
    getInteractorComparator
    
    Overrides:
    
    getInteractorComparator in class ProteinComparator
    
    Returns:
    
    a UnambiguousPolymerComparator object.
  - areEquals
```
public static boolean areEquals(Protein protein1,
                                Protein protein2)
```
    Use UnambiguousProteinComparator to know if two proteins are equals.
    
    Parameters:
    
    protein1 - a Protein object.
    
    protein2 - a Protein object.
    
    Returns:
    
    true if the two proteins are equal