Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousParticipantBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ParticipantBaseComparator

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousParticipantBaseComparator

All Implemented Interfaces:

Comparator<Participant>

public class UnambiguousParticipantBaseComparator
extends ParticipantBaseComparator

Unambiguous participant comparator It will first compare the interactors and stoichiometry using UnambiguousEntityComparator. If both interactors are the same, it will compare the biological roles using UnambiguousCvTermComparator.

This comparator will ignore all the other properties of a participant.

Since:

16/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousParticipantBaseComparator()
UnambiguousParticipantBaseComparator(UnambiguousEntityBaseComparator comparator)	Constructor for UnambiguousParticipantBaseComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Participant participant1, Participant participant2)	Use UnambiguousParticipantBaseComparator to know if two participants are equals.
int	compare(Participant participant1, Participant participant2)	It will first compare the interactors and stoichiometry using UnambiguousEntityComparator.
UnambiguousCvTermComparator	getCvTermComparator()	Getter for the field cvTermComparator.
UnambiguousEntityBaseComparator	getEntityBaseComparator()	getEntityBaseComparator
static int	hashCode(Participant participant)	hashCode

Methods inherited from class psidev.psi.mi.jami.utils.comparator.participant.ParticipantBaseComparator

isIgnoreInteractors, isIgnoreStoichiometry, setIgnoreInteractors, setIgnoreStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousParticipantBaseComparator

public UnambiguousParticipantBaseComparator()

Creates a new UnambiguousParticipantBaseComparator. It will use a UnambiguousInteractorComparator to compare interactors, a UnambiguousCvTermComparator to compare biological roles

UnambiguousParticipantBaseComparator

public UnambiguousParticipantBaseComparator(UnambiguousEntityBaseComparator comparator)

Constructor for UnambiguousParticipantBaseComparator.

Parameters:

comparator - a UnambiguousEntityBaseComparator object.

Method Detail

areEquals

public static boolean areEquals(Participant participant1,
                                Participant participant2)

Use UnambiguousParticipantBaseComparator to know if two participants are equals.

Parameters:

participant1 - a Participant object.

participant2 - a Participant object.

Returns:

true if the two participants are equal

hashCode

public static int hashCode(Participant participant)

hashCode

Parameters:

participant - a Participant object.

Returns:

the hashcode consistent with the equals method for this comparator

getEntityBaseComparator

public UnambiguousEntityBaseComparator getEntityBaseComparator()

getEntityBaseComparator

Overrides:

getEntityBaseComparator in class ParticipantBaseComparator

Returns:

a EntityBaseComparator object.

getCvTermComparator

public UnambiguousCvTermComparator getCvTermComparator()

Description copied from class: ParticipantBaseComparator

Getter for the field cvTermComparator.

Overrides:

getCvTermComparator in class ParticipantBaseComparator

Returns:

a Comparator object.

compare

public int compare(Participant participant1,
                   Participant participant2)

It will first compare the interactors and stoichiometry using UnambiguousEntityComparator. If both interactors are the same, it will compare the biological roles using UnambiguousCvTermComparator. This comparator will ignore all the other properties of a participant.

Specified by:

compare in interface Comparator<Participant>

Overrides:

compare in class ParticipantBaseComparator

Parameters:

participant1 - a Participant object.

participant2 - a Participant object.

Returns:

a int.