Package psidev.psi.mi.jami.utils.comparator.participant

Interface Summary

Interface	Description
CustomizableModelledParticipantComparator<E extends ModelledEntity>	A ModelledParticipantComparator that can be customized so we can ignore interactors when comparing modelled participants

Class Summary

Class	Description
CausalRelationshipComparator	Basic comparator for CausalRelationship It will first compare the relationType using AbstractCvTermComparator.
DefaultCausalRelationshipComparator	Default comparator for CausalRelationship It will first compare the relationType using DefaultCvTermComparator.
DefaultEntityBaseComparator	Default entity comparator It will first compare the interactors using DefaultInteractorComparator.
DefaultEntityComparator	Generic default entity comparator.
DefaultExactCausalRelationshipComparator	Default exact comparator for CausalRelationship It will first compare the relationType using DefaultCvTermComparator.
DefaultExactEntityBaseComparator	Default exact entity comparator It will first compare the interactors using DefaultExactInteractorComparator.
DefaultExactEntityComparator	Generic default exact entity comparator.
DefaultExactExperimentalEntityComparator	Default exact experimental entity comparator.
DefaultExactExperimentalParticipantPoolComparator	Default exact experimental participant pool comparator.
DefaultExactModelledEntityComparator	Default exact biological entity comparator.
DefaultExactModelledParticipantComparator	Default exact biological participant comparator.
DefaultExactModelledParticipantInteractorComparator	Default biological participant comparator based on the interactor only.
DefaultExactModelledParticipantPoolComparator	Default exact biological participant pool comparator.
DefaultExactParticipantBaseComparator	Default exact participant comparator It will first compare the interactors and stoichiometry using DefaultExactEntityComparator.
DefaultExactParticipantComparator	Generic default exact participant comparator.
DefaultExactParticipantEvidenceComparator	Default exact Experimental participant comparator.
DefaultExactParticipantEvidenceInteractorComparator	Default exact experimental participant comparator based on the interactor only.
DefaultExactParticipantInteractorComparator	It will compare the interactors using DefaultExactInteractorComparator.
DefaultExactParticipantPoolComparator	Default exact participant pool comparator It will first compare the interactors, biological role and stoichiometry using DefaultExactParticipantBaseComparator it will then compare the participant candidates using DefaultExactEntityBaseComparator.
DefaultExperimentalEntityComparator	Default experimental entity comparator.
DefaultExperimentalParticipantPoolComparator	Default experimental participant pool comparator.
DefaultModelledEntityComparator	Default biological entity comparator.
DefaultModelledParticipantComparator	Default biological participant comparator.
DefaultModelledParticipantInteractorComparator	Default biological participant comparator based on the interactor only.
DefaultModelledParticipantPoolComparator	Default biological participant pool comparator.
DefaultParticipantBaseComparator	Default participant comparator It will first compare the interactors and stoichiometry using DefaultEntityBaseComparator it will then compare the biological roles using DefaultCvTermComparator.
DefaultParticipantComparator	Generic default participant comparator.
DefaultParticipantEvidenceComparator	Default Experimental participant comparator.
DefaultParticipantEvidenceInteractorComparator	Default experimental participant comparator based on the interactor only.
DefaultParticipantInteractorComparator	It will compare the interactors using DefaultInteractorComparator.
DefaultParticipantPoolComparator	Default participant pool comparator It will first compare the interactors, biological role and stoichiometry using DefaultParticipantBaseComparator it will then compare the participant candidates using DefaultEntityBaseComparator.
EntityBaseComparator	Basic entity comparator.
EntityComparator	Generic entity comparator.
ExperimentalEntityComparator	Basic Experimental entity comparator.
ExperimentalParticipantPoolComparator	Basic Experimental participant pool comparator.
ModelledComparableParticipantComparator
ModelledEntityComparator	Basic biological entity comparator.
ModelledParticipantCollectionComparator	Comparator for collection of biological participants
ModelledParticipantComparator	Basic biological participant comparator.
ModelledParticipantPoolComparator	Basic biological participant pool comparator.
ParticipantBaseComparator	Basic participant comparator.
ParticipantCollectionComparator<T extends Entity>	Comparator for collection of participants
ParticipantComparator	Generic participant comparator.
ParticipantEvidenceComparator	Basic Experimental participant comparator.
ParticipantInteractorComparator<T extends Entity>	Participant comparator only based on the interactor.
ParticipantPoolComparator	Basic participant pool comparator.
StoichiometryComparator	Simple stoichiometry comparator.
UnambiguousCausalRelationshipComparator	Unambiguous comparator for CausalRelationship It will first compare the relationType using UnambiguousCvTermComparator.
UnambiguousEntityBaseComparator	Unambiguous entity comparator It will first compare the interactors using UnambiguousInteractorComparator.
UnambiguousEntityComparator	Unambiguous generic entity comparator Modelled participants come first and then experimental participants.
UnambiguousExactCausalRelationshipComparator	Unambiguous exact comparator for CausalRelationship It will first compare the relationType using UnambiguousCvTermComparator.
UnambiguousExactEntityBaseComparator	Unambiguous exact entity comparator It will first compare the interactors using UnambiguousExactInteractorComparator.
UnambiguousExactEntityComparator	Unambiguous exact generic entity comparator Modelled participants come first and then experimental participants.
UnambiguousExactExperimentalEntityComparator	Unambiguous exact Experimental entity comparator.
UnambiguousExactExperimentalParticipantPoolComparator	Unambiguous exact Experimental participant pool comparator.
UnambiguousExactModelledEntityComparator	unambiguous exact biological entity comparator.
UnambiguousExactModelledParticipantComparator	unambiguous exact biological participant comparator.
UnambiguousExactModelledParticipantInteractorComparator	Unambiguous exact biological participant comparator based on the interactor only.
UnambiguousExactModelledParticipantPoolComparator	unambiguous exact biological participant pool comparator.
UnambiguousExactParticipantBaseComparator	Unambiguous exact participant comparator It will first compare the interactors using UnambiguousExactEntityBaseComparator.
UnambiguousExactParticipantComparator	Unambiguous exact generic Participant comparator Modelled participants come first and then experimental participants.
UnambiguousExactParticipantEvidenceComparator	Unambiguous exact Experimental participant comparator.
UnambiguousExactParticipantEvidenceInteractorComparator	Unambiguous exact experimental participant comparator based on the interactor only.
UnambiguousExactParticipantInteractorComparator	It will compare the interactors using UnambiguousExactInteractorComparator.
UnambiguousExactParticipantPoolComparator	Unambiguous exact participant pool comparator It will first compares basic participant properties using UnambiguousExactParticipantBaseComparator, then it will compare participant pool type using cv term comparator and then it will compare each participant candidate using UnambiguousExactEntityBaseComparator
UnambiguousExperimentalEntityComparator	Unambiguous Experimental entity comparator.
UnambiguousExperimentalParticipantPoolComparator	Unambiguous Experimental participant pool comparator.
UnambiguousModelledEntityComparator	unambiguous biological entity comparator.
UnambiguousModelledParticipantComparator	Unambiguous biological participant comparator.
UnambiguousModelledParticipantInteractorComparator	Unambiguous biological participant comparator based on the interactor only.
UnambiguousModelledParticipantPoolComparator	unambiguous biological participant pool comparator.
UnambiguousParticipantBaseComparator	Unambiguous participant comparator It will first compare the interactors and stoichiometry using UnambiguousEntityComparator.
UnambiguousParticipantComparator	Unambiguous generic Participant comparator Modelled participants come first and then experimental participants.
UnambiguousParticipantEvidenceComparator	Unambiguous Experimental participant comparator.
UnambiguousParticipantEvidenceInteractorComparator	Unambiguous experimental participant comparator based on the interactor only.
UnambiguousParticipantInteractorComparator	It will compare the interactors using UnambiguousInteractorComparator.
UnambiguousParticipantPoolComparator	Unambiguous participant pool comparator It will first compares basic participant properties using UnambiguousParticipantBaseComparator, then it will compare participant pool type using cv term comparator and then it will compare each participant candidate using UnambiguousEntityBaseComparator