Package psidev.psi.mi.jami.xml.io.parser

Class FullXmlComplexParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser<Complex>

psidev.psi.mi.jami.xml.io.parser.FullXmlComplexParser

All Implemented Interfaces:

FullPsiXmlParser<Complex>, PsiXmlParser<Complex>

public class FullXmlComplexParser
extends AbstractFullPsiXmlParser<Complex>

Full Parser generating biological complex objects and ignore experimental details. It will load the all entrySet so is consuming a lot of memory in case of large files but is very performant for small files

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullXmlComplexParser(File file)	Constructor for FullXmlComplexParser.
FullXmlComplexParser(InputStream inputStream)	Constructor for FullXmlComplexParser.
FullXmlComplexParser(Reader reader)	Constructor for FullXmlComplexParser.
FullXmlComplexParser(URL url)	Constructor for FullXmlComplexParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser

close, createPsiXmlExceptionFrom, getEntrySet, getInteractorFactory, getListener, getVersion, hasFinished, parseEntrySet, parseNextInteraction, reInit, setCacheOfObjects, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FullXmlComplexParser

public FullXmlComplexParser(File file)
                     throws javax.xml.bind.JAXBException,
                            FileNotFoundException

Constructor for FullXmlComplexParser.

Parameters:

file - a File object.

Throws:

javax.xml.bind.JAXBException - if any.

FileNotFoundException - if any.

FullXmlComplexParser

public FullXmlComplexParser(InputStream inputStream)
                     throws javax.xml.bind.JAXBException

Constructor for FullXmlComplexParser.

Parameters:

inputStream - a InputStream object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlComplexParser

public FullXmlComplexParser(Reader reader)
                     throws javax.xml.bind.JAXBException

Constructor for FullXmlComplexParser.

Parameters:

reader - a Reader object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlComplexParser

public FullXmlComplexParser(URL url)
                     throws IOException,
                            javax.xml.bind.JAXBException

Constructor for FullXmlComplexParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

javax.xml.bind.JAXBException - if any.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractFullPsiXmlParser<Complex>

Returns:

a Unmarshaller object.

Throws:

javax.xml.bind.JAXBException - if any.