Package psidev.psi.mi.jami.xml.io.parser

Interface Summary

Interface	Description
FullPsiXmlParser<T extends Interaction>	Full parser that loads the all entry set.
PsiXmlParser<T extends Interaction>	Interface for PsiXmlParser

Class Summary

Class	Description
AbstractFullPsiXmlParser<T extends Interaction>	This class if for parser that will load the all file in memory
AbstractPsixmlBinaryParser<T extends Interaction,B extends BinaryInteraction>	Abstract class for a binary interaction parser
AbstractPsiXmlParser<T extends Interaction>	Parser for PSI-XML Returns an Iterator of interactions.
FullXmlBinaryEvidenceParser	Full Parser generating basic binary interaction objects and ignoring all experimental details.
FullXmlBinaryParser	Full Parser generating binary interactions that could be a mix or abstract interactions and interaction evidences.
FullXmlComplexParser	Full Parser generating biological complex objects and ignore experimental details.
FullXmlEvidenceParser	Full Parser generating interaction evidence objects and loading all experimental details.
FullXmlModelledBinaryParser	Full Parser generating binary modelled interaction objects and ignoring all experimental details.
FullXmlModelledParser	Full Parser generating modelled interaction objects and ignore experimental details.
FullXmlParser	Full Parser generating interaction objects that could be a mix or abstract interactions and interaction evidences.
JaxbUnmarshallerFactory	Factory to initialise JAXB context depending on the version and the interaction object category
LightFullXmlBinaryParser	Full Parser generating basic binary interaction objects and ignoring all experimental details.
LightFullXmlParser	Full Parser generating basic interaction objects and ignore experimental details.
LightXmlBinaryParser	Xml parser creating light binary interactions and ignoring experimental details
LightXmlParser	Parser generating basic interaction objects and ignore experimental details
NonCloseableInputStreamWrapper	Wrapper of inputStream
XmlBinaryEvidenceParser	Xml parser creating binary interaction evidences
XmlBinaryParser	Xml parser creating binary interactions that can be a mix of interaction evidences and abstract interactions
XmlComplexParser	Parser generating biological complex objects and ignore experimental details
XmlEvidenceParser	Parser generating interaction evidence objects with all experimental details
XmlModelledBinaryParser	Xml parser creating modelled binary interaction
XmlModelledParser	Parser generating modelled interaction objects and ignore experimental details
XmlParser	Parser generating interaction objects that can be interaction evidences or abstract interactions.
XmlReaderWithDefaultNamespace	Namespace filter that sets default namespace when no namespaces are found